A Branch-and-Cut Algorithm for the 2-Species Duplication-Loss Phylogeny Problem - Stefan Canzar; Sandro Andreotti (CoRR, 2012)

Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem. - Sandro Andreotti; Gunnar W. Klau; Knut Reinert (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees. - Sandro Andreotti; Knut Reinert; Stefan Canzar (J. Comput. Biol., 2013)

CIDANE: Comprehensive Isoform Discovery and Abundance Estimation. - Stefan Canzar; Sandro Andreotti; David Weese; Knut Reinert; Gunnar W. Klau (RECOMB, 2015)

Linear Programming and Integer Linear Programming in Bioinformatics. - Sandro Andreotti (2015)

SCORE: Smart Consensus Of RNA Expression - a consensus tool for detecting differentially expressed genes in bacteria. - Silver A. Wolf; Lennard Epping; Sandro Andreotti; Knut Reinert; Torsten Semmler (Bioinform., 2021)