PHAISTOS: A framework for Markov chain Monte Carlo simulation and inference of protein structure. - Wouter Boomsma; Jes Frellsen; Tim Harder; Sandro Bottaro; Kristoffer E. Johansson; Pengfei Tian; Kasper Stovgaard; Christian Andreetta; Simon Olsson; Jan B. Valentin; Lubomir D. Antonov; Anders S. Christensen; et al. (J. Comput. Chem., 2013)

Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations. - Francesco Di Palma; Sandro Bottaro; Giovanni Bussi (BMC Bioinform., 2015)

Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution. - Andreas Haahr Larsen; Yong Wang 056; Sandro Bottaro; Sergei Grudinin; Lise Arleth; Kresten Lindorff-Larsen (PLoS Comput. Biol., 2020)