Natural Selection Fails to Optimize Mutation Rates for Long-Term Adaptation on Rugged Fitness Landscapes. - Jeff Clune; Dusan Misevic; Charles Ofria; Richard E. Lenski; Santiago F. Elena; Rafael Sanjuán (PLoS Comput. Biol., 2008)

Robust dynamical pattern formation from a multifunctional minimal genetic circuit. - Guillermo Rodrigo; Javier Carrera; Santiago F. Elena; Alfonso Jaramillo (BMC Syst. Biol., 2010)

Evolved Modular Epistasis in Artificial Organisms. - Sergi Valverde; Ricard V. Solé; Santiago F. Elena (ALIFE, 2012)

Fine-Tuning Tomato Agronomic Properties by Computational Genome Redesign. - Javier Carrera; Asun Fernández del Carmen; Rafael Fernández-Muñoz; Jose Luis Rambla; Clara Pons; Alfonso Jaramillo; Santiago F. Elena; Antonio Granell (PLoS Comput. Biol., 2012)

Topology analysis and visualization of Potyvirus protein-protein interaction network. - Gabriel Bosque; Abel Folch-Fortuny; Jesús Picó; Alberto Ferrer 001; Santiago F. Elena (BMC Syst. Biol., 2014)

Evolving Living Technologies - Insights from the EvoEvo Project. - Guillaume Beslon; Santiago F. Elena; Paulien Hogeweg; Dominique Schneider; Susan Stepney (SSBSE, 2018)

Why are viral genomes so fragile? The bottleneck hypothesis. - Nono S. C. Merleau; Sophie Penisson; Philip J. Gerrish; Santiago F. Elena; Matteo Smerlak (PLoS Comput. Biol., 2021)

No two without three: Modeling dynamics of the trio RNA virus-defective interfering genomes-satellite RNAs. - J. Tomás Lázaro; Ariadna Albó; Tomás Alarcón; Santiago F. Elena; Josep Sardanyés (Commun. Nonlinear Sci. Numer. Simul., 2024)