TcSNP: a database of genetic variation in Trypanosoma cruzi. - Alejandro A. Ackermann; Santiago J. Carmona; Fernán Agüero (Nucleic Acids Res., 2009)

A computational pipeline for diagnostic biomarker discovery in the human pathogen Trypanosoma cruzi. - Santiago J. Carmona; Paula Sartor; Maria Leguizamón; Oscar Campetella; Fernán Agüero (BMC Bioinform., 2010)

Designing and implementing chemoinformatic approaches in TDR Targets Database: linking genes to chemical compounds in tropical disease causing pathogens. - María P. Magariños; John P. Overington; Santiago J. Carmona; Dhanasekaran Shanmugam; Maria A. Doyle; Stuart A. Ralph; Gregory J. Crowther; Christiane Hertz-Fowler; Solomon Nwaka; Matthew Berriman; David S. Roos; Wesley C. Van Voorhis; et al. (BMC Bioinform., 2010)

TDR Targets: a chemogenomics resource for neglected diseases. - María P. Magariños; Santiago J. Carmona; Gregory J. Crowther; Stuart A. Ralph; David S. Roos; Dhanasekaran Shanmugam; Wesley C. Van Voorhis; Fernán Agüero (Nucleic Acids Res., 2012)

STACAS: Sub-Type Anchor Correction for Alignment in Seurat to integrate single-cell RNA-seq data. - Massimo Andreatta; Santiago J. Carmona (Bioinform., 2021)

scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets. - Massimo Andreatta; Ariel J. Berenstein; Santiago J. Carmona (Bioinform., 2022)

SPICA: Swiss portal for immune cell analysis. - Massimo Andreatta; Fabrice P. A. David; Christian Iseli; Nicolas Guex; Santiago J. Carmona (Nucleic Acids Res., 2022)

Metacells untangle large and complex single-cell transcriptome networks. - Mariia Bilous; Loc Tran; Chiara Cianciaruso; Aurélie Gabriel; Hugo Michel; Santiago J. Carmona; Mikael J. Pittet; David Gfeller (BMC Bioinform., 2022)