Thread-cooperative, bit-parallel computation of levenshtein distance on GPU. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (ICS, 2014)

FM-Index on GPU: A Cooperative Scheme to Reduce Memory Footprint. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (ISPA, 2014)

Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access. - Alejandro Chacón; Santiago Marco-Sola; Antonio Espinosa 001; Paolo Ribeca; Juan Carlos Moure (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Efficient approximate string matching techniques for sequence alignment. - Santiago Marco-Sola (2017)

gemBS: high throughput processing for DNA methylation data from bisulfite sequencing. - Angelika Merkel; Marcos Fernández-Callejo; Eloi Casals; Santiago Marco-Sola; Ronald P. Schuyler; Ivo Glynne Gut; Simon C. Heath (Bioinform., 2019)

The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications. - Michele Cancilla; Laura Canalini; Federico Bolelli; Stefano Allegretti; Salvador Carrión; Roberto Paredes; Jon Ander Gómez; Simone Leo; Marco Enrico Piras; Luca Pireddu; Asaf Badouh; Santiago Marco-Sola; et al. (ICPR, 2020)

OpenCL-based FPGA Accelerator for Semi-Global Approximate String Matching Using Diagonal Bit-Vectors. - David Castells-Rufas; Santiago Marco-Sola; Quim Aguado-Puig; Antonio Espinosa-Morales; Juan Carlos Moure; Lluc Alvarez; Miquel Moretó (FPL, 2021)

An FPGA Accelerator of the Wavefront Algorithm for Genomics Pairwise Alignment. - Abbas Haghi; Santiago Marco-Sola; Lluc Alvarez; Dionysios Diamantopoulos; Christoph Hagleitner; Miquel Moretó (FPL, 2021)

Sargantana: A 1 GHz+ In-Order RISC-V Processor with SIMD Vector Extensions in 22nm FD-SOI. - Víctor Soria Pardos; Max Doblas; Guillem López-Paradís; Gerard Candón; Narcís Rodas; Xavier Carril; Pau Fontova-Musté; Neiel Leyva; Santiago Marco-Sola; Miquel Moretó (DSD, 2022)

Accelerating Edit-Distance Sequence Alignment on GPU Using the Wavefront Algorithm. - Quim Aguado-Puig; Santiago Marco-Sola; Juan Carlos Moure; David Castells-Rufas; Lluc Alvarez; Antonio Espinosa 001; Miquel Moretó (IEEE Access, 2022)

FPGA Acceleration of Pre-Alignment Filters for Short Read Mapping With HLS. - David Castells-Rufas; Santiago Marco-Sola; Juan Carlos Moure; Quim Aguado-Puig; Antonio Espinosa 001 (IEEE Access, 2022)

RISC-V for Genome Data Analysis: Opportunities and Challenges. - Lorién López-Villellas; Esteve Pineda-Sánchez; Asaf Badouh; Santiago Marco-Sola; Pablo Ibáñez 001; Jesús Alastruey-Benedé; Miquel Moretó (DCIS, 2023)

WFAsic: A High-Performance ASIC Accelerator for DNA Sequence Alignment on a RISC-V SoC. - Abbas Haghi; Lluc Alvarez; Jordi Fornt; Juan Miguel De Haro Ruiz; Roger Figueras; Max Doblas; Santiago Marco-Sola; Miquel Moretó (ICPP, 2023)

GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment. - Max Doblas; Oscar Lostes-Cazorla; Quim Aguado-Puig; Nick Cebry; Pau Fontova-Musté; Christopher Frances Batten; Santiago Marco-Sola; Miquel Moretó (MICRO, 2023)

Optimal gap-affine alignment in O(s) space. - Santiago Marco-Sola; Jordan M. Eizenga; Andrea Guarracino; Benedict Paten; Erik Garrison; Miquel Moretó (Bioinform., 2023)

Accurate and efficient constrained molecular dynamics of polymers using Newton's method and special purpose code. - Lorién López-Villellas; Carl Christian Kjelgaard Mikkelsen; Juan José Galano-Frutos; Santiago Marco-Sola; Jesús Alastruey-Benedé; Pablo Ibáñez 001; Miquel Moretó; Javier Sancho; Pablo García-Risueño (Comput. Phys. Commun., 2023)

WFA-GPU: gap-affine pairwise read-alignment using GPUs. - Quim Aguado-Puig; Max Doblas; Christos Matzoros; Antonio Espinosa 001; Juan Carlos Moure; Santiago Marco-Sola; Miquel Moretó (Bioinform., 2023)

WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment. - Abbas Haghi; Santiago Marco-Sola; Lluc Alvarez; Dionysios Diamantopoulos; Christoph Hagleitner; Miquel Moretó (Future Gener. Comput. Syst., 2023)

QUETZAL: Vector Acceleration Framework for Modern Genome Sequence Analysis Algorithms. - Julian Pavon; Iván Vargas Valdivieso; Carlos Rojas; César Hernández; Mehmet Aslan; Roger Figueras; Yichao Yuan; Joël Lindegger; Mohammed Alser; Francesc Moll; Santiago Marco-Sola; Oguz Ergin; et al. (ISCA, 2024)

GenArchBench: A genomics benchmark suite for arm HPC processors. - Lorién López-Villellas; Rubén Langarita-Benítez; Asaf Badouh; Víctor Soria Pardos; Quim Aguado-Puig; Guillem López-Paradís; Max Doblas; Javier Setoain; Chulho Kim; Makoto Ono; Adrià Armejach; Santiago Marco-Sola; et al. (Future Gener. Comput. Syst., 2024)

ILVES: Accurate and efficient bond length and angle constraints in molecular dynamics. - Lorién López-Villellas; Carl Christian Kjelgaard Mikkelsen; Juan José Galano-Frutos; Santiago Marco-Sola; Jesús Alastruey-Benedé; Pablo Ibáñez 001; Miquel Moretó; Maria Cristina De Rosa; Pablo García-Risueño (CoRR, 2025)