Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering. - Sara Aibar; Celia Fontanillo; Conrad Droste; Javier De Las Rivas (Bioinform., 2015)

Identification of expression patterns in the progression of disease stages by integration of transcriptomic data. - Sara Aibar; María Abáigar; Francisco J. Campos-Laborie; Jose Manuel Sánchez-Santos; Jesus M. Hernandez-Rivas; Javier De Las Rivas (BMC Bioinform., 2016)

GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks. - Thomas Moerman; Sara Aibar Santos; Carmen Bravo González-Blas; Jaak Simm; Yves Moreau; Jan Aerts; Stein Aerts (Bioinform., 2019)