Linearized, time-dependent, non-adiabatic quantum correlation functions. - Sara Bonella; David F. Coker (Comput. Phys. Commun., 2005)

SDPhound, a Mutual Information-Based Method to Investigate Specificity-Determining Positions. - Sara Bonella; Walter Rocchia; Pietro Amat; Riccardo Nifosí; Valentina Tozzini (Algorithms, 2009)

Approximating Time-Dependent Quantum Statistical Properties. - Sara Bonella; Giovanni Ciccotti (Entropy, 2014)

Quantum Correlations under Time Reversal and Incomplete Parity Transformations in the Presence of a Constant Magnetic Field. - Paolo De Gregorio; Sara Bonella; Lamberto Rondoni (Symmetry, 2017)

MetalWalls: A classical molecular dynamics software dedicated to the simulation of electrochemical systems. - Abel Marin-Laflèche; Matthieu Haefele; Laura Scalfi; Alessandro Coretti; Thomas Dufils; Guillaume Jeanmairet; Stewart Reed; Alessandra Serva; Roxanne Berthin; Camille Bacon; Sara Bonella; Benjamin Rotenberg; et al. (J. Open Source Softw., 2020)

Fluctuation Relations for Dissipative Systems in Constant External Magnetic Field: Theory and Molecular Dynamics Simulations. - Alessandro Coretti; Lamberto Rondoni; Sara Bonella (Entropy, 2021)

OSSCAR, an open platform for collaborative development of computational tools for education in science. - Dou Du; Taylor J. Baird; Sara Bonella; Giovanni Pizzi (Comput. Phys. Commun., 2023)

Jupyter widgets and extensions for education and research in computational physics and chemistry. - Dou Du; Taylor J. Baird; Kristjan Eimre; Sara Bonella; Giovanni Pizzi (Comput. Phys. Commun., 2024)