Interactive network visualization in Jupyter notebooks: visJS2jupyter. - Sara Brin Rosenthal; Julia Len; Mikayla Webster; Aaron Gary; Amanda Birmingham; Kathleen M. Fisch (Bioinform., 2018)

Ten Simple Rules for Reproducible Research in Jupyter Notebooks. - Adam Rule; Amanda Birmingham; Cristal Zuñiga; Ilkay Altintas; Shih-Cheng Huang; Rob Knight 001; Niema Moshiri; Mai H. Nguyen; Sara Brin Rosenthal; Fernando Pérez; Peter W. Rose (CoRR, 2018)

On entropy and information in gene interaction networks. - Z. S. Wallace; Sara Brin Rosenthal; Kathleen M. Fisch; Trey Ideker; Roman Sásik (Bioinform., 2019)

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. - Adam Rule; Amanda Birmingham; Cristal Zuñiga; Ilkay Altintas; Shih-Cheng Huang; Rob Knight 001; Niema Moshiri; Mai H. Nguyen; Sara Brin Rosenthal; Fernando Pérez; Peter W. Rose (PLoS Comput. Biol., 2019)

Mapping the gene network landscape of Alzheimer's disease through integrating genomics and transcriptomics. - Sara Brin Rosenthal; Hao Wang 128; Da Shi; Cin Liu; Ruben Abagyan; Linda K. McEvoy; Chi-Hua Chen (PLoS Comput. Biol., 2022)