tDRmapper: challenges and solutions to mapping, naming, and quantifying tRNA-derived RNAs from human small RNA-sequencing data. - Sara R. Selitsky; Praveen Sethupathy (BMC Bioinform., 2015)

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer. - Lisle E. Mose; Sara R. Selitsky; Lisa M. Bixby; David L. Marron; Michael D. Iglesia; Jonathan S. Serody; Charles M. Perou; Benjamin Vincent; Joel S. Parker (Bioinform., 2016)