Noise Tolerance of the Universal Similarity Metric Applied to Protein Contact Map Comparison in Two Dimensions. - Sara Rahmati; Janice I. Glasgow (BIOCOMP, 2008)

Comparing protein contact maps via Universal Similarity Metric: an improvement in the noise-tolerance. - Sara Rahmati; Janice I. Glasgow (Int. J. Comput. Biol. Drug Des., 2009)

pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. - Sara Rahmati; Mark Abovsky; Chiara Pastrello; Igor Jurisica (Nucleic Acids Res., 2017)

Two Decades of Biological Pathway Databases: Results and Challenges. - Sara Rahmati; Chiara Pastrello; Andrea E. M. Rossos; Igor Jurisica (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. - Sara Rahmati; Mark Abovsky; Chiara Pastrello; Max Kotlyar; Richard Lu; Christian A. Cumbaa; Proton Rahman; Vinod Chandran; Igor Jurisica (Nucleic Acids Res., 2020)

HSSAGA: Designation and scheduling of nurses for taking care of COVID-19 patients using novel method of Hybrid Salp Swarm Algorithm and Genetic Algorithm. - Moein Qaisari Hasan Abadi; Sara Rahmati; Abbas Sharifi; Mohsen Ahmadi (Appl. Soft Comput., 2021)

Towards a potential pan-cancer prognostic signature for gene expression based on probesets and ensemble machine learning. - Davide Chicco; Abbas Alameer; Sara Rahmati; Giuseppe Jurman (BioData Min., 2022)

miRAnno - network-based functional microRNA annotation. - Tomás Tokár; Chiara Pastrello; Mark Abovsky; Sara Rahmati; Igor Jurisica (Bioinform., 2022)

3D Live-cell Imaging of In Vitro Neuronal Microtissues - Using Spectral Image Scanning Microscopy. (Imagerie 3D de cellules vivantes de micro-tissus neuronaux in vitroà l'aide de la microscopie à balayage d'images spectrales). - Sara Rahmati (2022)