Telescoper: de novo assembly of highly repetitive regions. - Ma'ayan Bresler; Sara Sheehan; Andrew H. Chan; Yun S. Song (Bioinform., 2012)

Decoding Coalescent Hidden Markov Models in Linear Time. - Kelley Harris; Sara Sheehan; John A. Kamm; Yun S. Song (RECOMB, 2014)

Scalable Algorithms for Population Genomic Inference. - Sara Sheehan (2015)

Deep Learning for Population Genetic Inference. - Sara Sheehan; Yun S. Song (PLoS Comput. Biol., 2016)