T1DBase: integration and presentation of complex data for type 1 diabetes research. - Erin M. Hulbert; Luc J. Smink; Ellen C. Adlem; James E. Allen; David B. Burdick; Oliver S. Burren; Christopher C. Cavnor; Geoffrey E. Dolman; Daisy Flamez; Karen F. Friery; Barry C. Healy; Sarah A. Killcoyne; et al. (Nucleic Acids Res., 2007)

Systems biology driven software design for the research enterprise. - John Boyle; Christopher C. Cavnor; Sarah A. Killcoyne; Ilya Shmulevich (BMC Bioinform., 2008)

Adaptable data management for systems biology investigations. - John Boyle; Hector Rovira; Christopher C. Cavnor; David B. Burdick; Sarah A. Killcoyne; Ilya Shmulevich (BMC Bioinform., 2009)

Managing Chaos: Lessons Learned Developing Software in the Life Sciences. - Sarah A. Killcoyne; John Boyle (Comput. Sci. Eng., 2009)

Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data. - Steven Lewis; Sheila Reynolds; Hector Rovira; Mike O'Leary; Sarah A. Killcoyne; Ilya Shmulevich; John Boyle (CloudCom, 2010)

An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity. - Hector Rovira; Sarah A. Killcoyne; Ilya Shmulevich; John Boyle (DILS, 2010)

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments. - David B. Burdick; Christopher C. Cavnor; Jeremy Handcock; Sarah A. Killcoyne; Jake Lin; Bruz Marzolf; Stephen A. Ramsey; Hector Rovira; Ryan Bressler; Ilya Shmulevich; John Boyle (BMC Bioinform., 2010)

Interfaces to PeptideAtlas: a case study of standard data access systems. - Sarah A. Killcoyne; Jeremy Handcock; Thomas Robinson; Eric W. Deutsch; John Boyle (Briefings Bioinform., 2012)

Methods for visual mining of genomic and proteomic data atlases. - John Boyle; Richard Kreisberg; Ryan Bressler; Sarah A. Killcoyne (BMC Bioinform., 2012)

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework. - Steven Lewis; Attila Csordas; Sarah A. Killcoyne; Henning Hermjakob; Michael R. Hoopmann; Robert L. Moritz; Eric W. Deutsch; John Boyle (BMC Bioinform., 2012)

FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses. - Sarah A. Killcoyne; Antonio del Sol (BMC Bioinform., 2014)