Comparative Detection of Processed Small RNAs in Archaea. - Christian Höner zu Siederdissen; Sarah Berkemer; Fabian Amman; Axel Wintsche; Sebastian Will; Sonja J. Prohaska; Peter F. Stadler (IWBBIO, 2014)

Spiders can be Recognized by Counting Their Legs. - Sarah Berkemer; Ricardo Régis Cavalcante Chaves; Adrian Fritz; Marc Hellmuth; Maribel Hernandez-Rosales; Peter F. Stadler (Math. Comput. Sci., 2015)

Algebraic Dynamic Programming on Trees. - Sarah Berkemer; Christian Höner zu Siederdissen; Peter F. Stadler (Algorithms, 2017)

Alignments as Compositional Structures. - Sarah J. Berkemer; Christian Höner zu Siederdissen; Peter F. Stadler (CoRR, 2018)

Towards Dynamic Programming on Generalized Data Structures: and Applications of Dynamic Programming in Bioinformatics - Sarah Berkemer (2019)

Compositional Properties of Alignments. - Sarah J. Berkemer; Christian Höner zu Siederdissen; Peter F. Stadler (Math. Comput. Sci., 2021)

Automated design of dynamic programming schemes for RNA folding with pseudoknots. - Bertrand Marchand; Sebastian Will; Sarah J. Berkemer; Yann Ponty; Laurent Bulteau (Algorithms Mol. Biol., 2023)

RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions. - Kimon Boehmer; Sarah J. Berkemer; Sebastian Will; Yann Ponty (WABI, 2024)

City composition and accessibility statistics in and around Paris. - Marie-Olive Thaury; Simon Genet; Léopold Maurice; Paola Tubaro; Sarah J. Berkemer (Frontiers Big Data, 2024)

Infrared: a declarative tree decomposition-powered framework for bioinformatics. - Hua-Ting Yao; Bertrand Marchand; Sarah J. Berkemer; Yann Ponty; Sebastian Will (Algorithms Mol. Biol., 2024)