Current-and Varifold-Based Registration of Lung Vessel and Airway Trees. - Yue Pan; Gary E. Christensen; Oguz C. Durumeric; Sarah E. Gerard; Joseph M. Reinhardt; Geoffrey D. Hugo (CVPR Workshops, 2016)

Tissue-Volume Preserving Deformable Image Registration for 4DCT Pulmonary Images. - Bowen Zhao; Gary E. Christensen; Joo Hyun Song; Yue Pan; Sarah E. Gerard; Joseph M. Reinhardt; Kaifang Du; Taylor Patton; John E. Bayouth; Geoffrey D. Hugo (CVPR Workshops, 2016)

Transfer Learning for Segmentation of Injured Lungs Using Coarse-to-Fine Convolutional Neural Networks. - Sarah E. Gerard; Jacob Herrmann; David W. Kaczka; Joseph M. Reinhardt (RAMBO+BIA+TIA@MICCAI, 2018)

Detecting Out-of-Phase Ventilation Using 4DCT to Improve Radiation Therapy for Lung Cancer. - Wei Shao 008; Taylor J. Patton; Sarah E. Gerard; Yue Pan; Joseph M. Reinhardt; John E. Bayouth; Oguz C. Durumeric; Gary E. Christensen (RAMBO+BIA+TIA@MICCAI, 2018)

Sensitivity analysis of Jacobian determinant used in treatment planning for lung cancer. - Wei Shao 008; Sarah E. Gerard; Yue Pan; Taylor J. Patton; Joseph M. Reinhardt; Oguz C. Durumeric; John E. Bayouth; Gary E. Christensen (Image Processing, 2018)

Pulmonary Lobe Segmentation Using A Sequence of Convolutional Neural Networks For Marginal Learning. - Sarah E. Gerard; Joseph M. Reinhardt (ISBI, 2019)

FissureNet: A Deep Learning Approach For Pulmonary Fissure Detection in CT Images. - Sarah E. Gerard; Taylor J. Patton; Gary E. Christensen; John E. Bayouth; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2019)

Automatic Quantification of Pulmonary Fissure Integrity: A Repeatability Analysis. - Zachary W. Althof; Sarah E. Gerard; Yue Pan; Gary E. Christensen; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2020)

Estimating Local Tissue Expansion in Thoracic Computed Tomography Images Using Convolutional Neural Networks. - Sarah E. Gerard; Joseph M. Reinhardt; Gary E. Christensen; Raúl San José Estépar (ISBI, 2020)

Assessment of Lung Biomechanics in COPD Using Image Registration. - Yue Pan; Gary E. Christensen; Oguz C. Durumeric; Sarah E. Gerard; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2020)

An open-source framework for pulmonary fissure completeness assessment. - James C. Ross; Pietro Nardelli; Jorge Onieva; Sarah E. Gerard; Rola Harmouche; Yuka Okajima; Alejandro A. Díaz 001; George R. Washko; Raúl San José Estépar (Comput. Medical Imaging Graph., 2020)

CT Image Segmentation for Inflamed and Fibrotic Lungs Using a Multi-Resolution Convolutional Neural Network. - Sarah E. Gerard; Jacob Herrmann; Yi Xin; Kevin T. Martin; Emanuele Rezoagli; Davide Ippolito; Giacomo Bellani; Maurizio Cereda; Junfeng Guo; Eric A. Hoffman; David W. Kaczka; Joseph M. Reinhardt (CoRR, 2020)

Multi-resolution convolutional neural networks for fully automated segmentation of acutely injured lungs in multiple species. - Sarah E. Gerard; Jacob Herrmann; David W. Kaczka; Guido Musch; Ana Fernandez-Bustamante; Joseph M. Reinhardt (Medical Image Anal., 2020)

N-Phase Local Expansion Ratio for Characterizing Out-of-Phase Lung Ventilation. - Wei Shao 008; Taylor J. Patton; Sarah E. Gerard; Yue Pan; Joseph M. Reinhardt; Oguz C. Durumeric; John E. Bayouth; Gary E. Christensen (IEEE Trans. Medical Imaging, 2020)

Recursive Refinement Network for Deformable Lung Registration between Exhale and Inhale CT Scans. - Xinzi He; Jia Guo; Xuzhe Zhang; Hanwen Bi; Sarah E. Gerard; David W. Kaczka; Amin Motahari; Eric A. Hoffman; Joseph M. Reinhardt; R. Graham Barr; Elsa D. Angelini; Andrew Laine (CoRR, 2021)

Single Volume Lung Biomechanics from Chest Computed Tomography Using a Mode Preserving Generative Adversarial Network. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Di Wang; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2022)

Robust Measures of Image-Registration-Derived Lung Biomechanics in SPIROMICS. - Yue Pan; Di Wang; Muhammad F. A. Chaudhary; Wei Shao 008; Sarah E. Gerard; Oguz C. Durumeric; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt; Gary E. Christensen (J. Imaging, 2022)

Bridging the Task Barriers: Online Knowledge Distillation Across Tasks for Semi-supervised Mediastinal Segmentation in CT. - Muhammad F. A. Chaudhary; Seyed Soheil Hosseini; R. Graham Barr; Joseph M. Reinhardt; Eric A. Hoffman; Sarah E. Gerard (MLMI@MICCAI (1), 2023)

Automatic segmentation of lung findings in CT and application to Long COVID. - Diedre S. Carmo; Rosarie A. Tudas; Alejandro P. Comellas; Letícia Rittner; Roberto A. Lotufo; Joseph M. Reinhardt; Sarah E. Gerard (CoRR, 2023)

MEDPSeg: End-to-end segmentation of pulmonary structures and lesions in computed tomography. - Diedre S. Carmo; Jean Ribeiro; Alejandro P. Comellas; Joseph M. Reinhardt; Sarah E. Gerard; Letícia Rittner; Roberto A. Lotufo (CoRR, 2023)

Beyond Intensity Transforms: Medical Image Synthesis Under Large Deformation. - Muhammad F. A. Chaudhary; Joseph M. Reinhardt; Sarah E. Gerard (SASHIMI@MICCAI, 2024)

LungViT: Ensembling Cascade of Texture Sensitive Hierarchical Vision Transformers for Cross-Volume Chest CT Image-to-Image Translation. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2024)

Multimodal Learning for Lung Segmentation: Enhancing UTE MRI Segmentation with CT Datasets. - Partho Ghosh; Keegan R. Staab; Jonathan L. Percy; Abhilash Kizhakke Puliyakote; Marrissa McIntosh; Andrew Hahn; Sean B. Fain; Sarah E. Gerard (ISBI, 2025)

Open-Source Manually Annotated Vocal Tract Database for Automatic Segmentation from 3D MRI Using Deep Learning: Benchmarking 2D and 3D Convolutional and Transformer Networks. - Subin Erattakulangara; Karthika Kelat; Katie Burnham; Rachel Balbi; Sarah E. Gerard; David Meyer; Sajan Goud Lingala (CoRR, 2025)