Economic Genome Assembly from Low Coverage Illumina and Nanopore Data. - Thomas Gatter; Sarah von Löhneysen; Polina Drozdova; Tom Hartmann; Peter F. Stadler (WABI, 2020)

LazyB: fast and cheap genome assembly. - Thomas Gatter; Sarah von Löhneysen; Jörg Fallmann; Polina Drozdova; Tom Hartmann; Peter F. Stadler (Algorithms Mol. Biol., 2021)

Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction. - Sarah von Löhneysen; Thomas Spicher; Yuliia Varenyk; Hua-Ting Yao; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler (ISBRA, 2023)

Local RNA folding revisited. - Maria Waldl; Thomas Spicher; Ronny Lorenz; Irene K. Beckmann; Ivo L. Hofacker; Sarah von Löhneysen; Peter F. Stadler (J. Bioinform. Comput. Biol., 2023)

Limits of experimental evidence in RNA secondary structure prediction. - Sarah von Löhneysen; Mario Mörl; Peter F. Stadler (Frontiers Bioinform., 2024)

Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction. - Sarah von Löhneysen; Thomas Spicher; Yuliia Varenyk; Hua-Ting Yao; Ronny Lorenz; Ivo L. Hofacker; Peter F. Stadler (J. Comput. Biol., 2024)