ARCS: scaffolding genome drafts with linked reads. - Sarah Yeo; Lauren Coombe; René L. Warren; Justin Chu; Inanç Birol (Bioinform., 2018)

Tigmint: correcting assembly errors using linked reads from large molecules. - Shaun D. Jackman; Lauren Coombe; Justin Chu; René L. Warren; Benjamin P. Vandervalk; Sarah Yeo; Zhuyi Xue; Hamid Mohamadi; Jörg Bohlmann; Steven J. M. Jones; Inanç Birol (BMC Bioinform., 2018)

Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters. - Justin Chu; Hamid Mohamadi; Emre Erhan; Jeffery Tse; Readman Chiu; Sarah Yeo; Inanç Birol (Proc. Natl. Acad. Sci. USA, 2020)