Oligomeric protein structure networks: insights into protein-protein interactions. - K. V. Brinda; Saraswathi Vishveshwara (BMC Bioinform., 2005)

A Deterministic Optimization Approach to Protein Sequence Design Using Continuous Models. - Sung Key Koh; G. K. Ananthasuresh; Saraswathi Vishveshwara (Int. J. Robotics Res., 2005)

Correlation of the Side-Chain Hubs with the Functional Residues in DNA Binding Protein Structures. - R. Sathyapriya; K. V. Brinda; Saraswathi Vishveshwara (J. Chem. Inf. Model., 2006)

Insights into Protein-DNA Interactions through Structure Network Analysis. - R. Sathyapriya; M. S. Vijayabaskar; Saraswathi Vishveshwara (PLoS Comput. Biol., 2008)

Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks. - M. S. Vijayabaskar; Saraswathi Vishveshwara (BMC Bioinform., 2010)

Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks. - M. S. Vijayabaskar; Saraswathi Vishveshwara (PLoS Comput. Biol., 2012)

Ranking the quality of protein structure models using sidechain based network properties. - Soma Ghosh; Saraswathi Vishveshwara (F1000Research, 2014)

Mechanism of Iron-Dependent Repressor (IdeR) Activation and DNA Binding: A Molecular Dynamics and Protein Structure Network Study. - Soma Ghosh; Nagasuma R. Chandra; Saraswathi Vishveshwara (PLoS Comput. Biol., 2015)

A graph spectral-based scoring scheme for network comparison. - Vasundhara Gadiyaram; Sambit Ghosh; Saraswathi Vishveshwara (J. Complex Networks, 2017)

From Quantum Chemistry to Networks in Biology: A Graph Spectral Approach to Protein Structure Analyses. - Vasundhara Gadiyaram; Smitha Vishveshwara; Saraswathi Vishveshwara (J. Chem. Inf. Model., 2019)