Lower Bounds for Approximating Shortest Superstrings over an Alphabet of Size 2. - Sascha Ott (WG, 1999)

Inferring a Union of Halfspaces from Examples. - Tatsuya Akutsu; Sascha Ott (COCOON, 2002)

On the Complexity of Deriving Position Specific Score Matrices from Examples. - Tatsuya Akutsu; Hideo Bannai; Satoru Miyano; Sascha Ott (CPM, 2002)

Intrasplicing - Analysis of Long Intron Sequences. - Sascha Ott; Yoshinori Tamada; Hideo Bannai; Kenta Nakai; Satoru Miyano (Pacific Symposium on Biocomputing, 2003)

Finding Optimal Models for Small Gene Networks. - Sascha Ott; Seiya Imoto; Satoru Miyano (Pacific Symposium on Biocomputing, 2004)

Superiority of network motifs over optimal networks and an application to the revelation of gene network evolution. - Sascha Ott; Annika Hansen; SunYong Kim; Satoru Miyano (Bioinform., 2005)

A comparative study of S/MAR prediction tools. - Kenneth Evans; Sascha Ott; Annika Hansen; Georgy Koentges; Lorenz Wernisch (BMC Bioinform., 2007)

On the complexity of deriving position specific score matrices from positive and negative sequences. - Tatsuya Akutsu; Hideo Bannai; Satoru Miyano; Sascha Ott (Discret. Appl. Math., 2007)

Transcriptional programs: Modelling higher order structure in transcriptional control. - John E. Reid; Sascha Ott; Lorenz Wernisch (BMC Bioinform., 2009)

An alignment-free model for comparison of regulatory sequences. - Hashem Koohy; Nigel P. Dyer; John E. Reid; Georgy Koentges; Sascha Ott (Bioinform., 2010)

MEME-LaB: motif analysis in clusters. - Paul Brown; Laura Baxter; Richard Hickman; Jim Beynon; Jonathan D. Moore; Sascha Ott (Bioinform., 2013)

Wigwams: identifying gene modules co-regulated across multiple biological conditions. - Krzysztof Polanski; Johanna Rhodes; Claire Hill; Peijun Zhang; Dafyd J. Jenkins; Steven J. Kiddle; Aleksey Jironkin; Jim Beynon; Vicky Buchanan-Wollaston; Sascha Ott; Katherine J. Denby (Bioinform., 2014)

Bringing numerous methods for expression and promoter analysis to a public cloud computing service. - Krzysztof Polanski; Bo Gao 001; Sam A. Mason; Paul Brown; Sascha Ott; Katherine J. Denby; David L. Wild (Bioinform., 2018)

TimeTeller: A tool to probe the circadian clock as a multigene dynamical system. - Denise Vlachou; Maria Veretennikova; Laura Usselmann; Vadim Vasilyev; Sascha Ott; Georg A. Bjarnason; Robert Dallmann; Francis Lévi; David A. Rand (PLoS Comput. Biol., 2024)

Integrative systems biology approaches for analyzing microbiome dysbiosis and species interactions. - Syed Sabih Ur Rehman; Muhammad Ibtisam Nasar; Cristina S. Mesquita; Souhaila Al Khodor; Richard A. Notebaart; Sascha Ott; Sunil Mundra; Ramesh P. Arasardanam; Khalid Muhammad; Mohammad Tauqeer Alam (Briefings Bioinform., 2025)