Hydrogen placement in protein-ligand complexes under consideration of tautomerism. - Stefan Bietz; Sascha Urbaczek; Matthias Rarey (J. Cheminformatics, 2011)

NAOMI: On the Almost Trivial Task of Reading Molecules from Different File formats. - Sascha Urbaczek; Adrian Kolodzik; J. Robert Fischer; Tobias Lippert; Stefan Heuser; Inken Groth; Tanja Schulz-Gasch; Matthias Rarey (J. Chem. Inf. Model., 2011)

A flexible-hydrogen interaction model for protein-ligand docking. - Angela M. Henzler; Sascha Urbaczek; Benjamin Schulz; Matthias Rarey (J. Cheminformatics, 2012)

Unique Ring Families: A Chemically Meaningful Description of Molecular Ring Topologies. - Adrian Kolodzik; Sascha Urbaczek; Matthias Rarey (J. Chem. Inf. Model., 2012)

MONA - Interactive manipulation of molecule collections. - Matthias Hilbig 001; Sascha Urbaczek; Inken Groth; Stefan Heuser; Matthias Rarey (J. Cheminformatics, 2013)

Let's talk about rings. - Matthias Rarey; Adrian Kolodzik; Sascha Urbaczek (J. Cheminformatics, 2013)

Fast Protein Binding Site Comparison via an Index-Based Screening Technology. - Mathias M. von Behren; Andrea Volkamer; Angela M. Henzler; Karen Schomburg; Sascha Urbaczek; Matthias Rarey (J. Chem. Inf. Model., 2013)

Reading PDB: Perception of Molecules from 3D Atomic Coordinates. - Sascha Urbaczek; Adrian Kolodzik; Inken Groth; Stefan Heuser; Matthias Rarey (J. Chem. Inf. Model., 2013)

An integrated approach to knowledge-driven structure-based virtual screening. - Angela M. Henzler; Sascha Urbaczek; Matthias Hilbig 001; Matthias Rarey (J. Comput. Aided Mol. Des., 2014)

Protoss: a holistic approach to predict tautomers and protonation states in protein-ligand complexes. - Stefan Bietz; Sascha Urbaczek; Benjamin Schulz; Matthias Rarey (J. Cheminformatics, 2014)

Facing the Challenges of Structure-Based Target Prediction by Inverse Virtual Screening. - Karen Schomburg; Stefan Bietz; Hans Briem; Angela M. Henzler; Sascha Urbaczek; Matthias Rarey (J. Chem. Inf. Model., 2014)

The Valence State Combination Model: A Generic Framework for Handling Tautomers and Protonation States. - Sascha Urbaczek; Adrian Kolodzik; Matthias Rarey (J. Chem. Inf. Model., 2014)

Ein konsistentes Framework für automatisiertes virtuelles Screening. - Sascha Urbaczek (Ausgezeichnete Informatikdissertationen, 2015)

A consistent cheminformatics framework for automated virtual screening. - Sascha Urbaczek (2015)