CGHcall: calling aberrations for array CGH tumor profiles. - Mark A. van de Wiel; Kyung In Kim; Sjoerd J. Vosse; Wessel N. van Wieringen; Saskia M. Wilting; Bauke Ylstra (Bioinform., 2007)

tigaR: integrative significance analysis of temporal differential gene expression induced by genomic abnormalities. - Viktorian Miok; Saskia M. Wilting; Mark A. van de Wiel; Annelieke Jaspers; Paula I. van Noort; Ruud H. Brakenhoff; Peter J. F. Snijders; Renske D. M. Steenbergen; Wessel N. van Wieringen (BMC Bioinform., 2014)

Better diagnostic signatures from RNAseq data through use of auxiliary co-data. - Putri W. Novianti; Barbara C. Snoek; Saskia M. Wilting; Mark A. van de Wiel (Bioinform., 2017)

Improved high-dimensional prediction with Random Forests by the use of co-data. - Dennis E. te Beest; Steven W. Mes; Saskia M. Wilting; Ruud H. Brakenhoff; Mark A. van de Wiel (BMC Bioinform., 2017)

Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons. - Marcel Smid; Robert R. J. Coebergh van den Braak; Harmen J. G. van de Werken; Job van Riet; Anne van Galen; Vanja de Weerd; Michelle van der Vlugt-Daane; Sandra I. Bril; Zarina S. Lalmahomed; Wigard P. Kloosterman; Saskia M. Wilting; John A. Foekens; et al. (BMC Bioinform., 2018)