Identification of bacteriophage genome sequences with representation learning. - Zeheng Bai; Yao-zhong Zhang; Satoru Miyano; Rui Yamaguchi; Kosuke Fujimoto; Satoshi Uematsu; Seiya Imoto (Bioinform., 2022)

Zero-shot-capable identification of phage-host relationships with whole-genome sequence representation by contrastive learning. - Yao-zhong Zhang; Yunjie Liu; Zeheng Bai; Kosuke Fujimoto; Satoshi Uematsu; Seiya Imoto (Briefings Bioinform., 2023)

ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics. - Noriaki Sato; Miho Uematsu; Kosuke Fujimoto; Satoshi Uematsu; Seiya Imoto (Bioinform., 2023)