KVFinder: steered identification of protein cavities as a PyMOL plugin. - Saulo Henrique Pires de Oliveira; Felipe A. N. Ferraz; Rodrigo V. Honorato; José Xavier-Neto; Tiago José P. Sobreira; Paulo S. L. de Oliveira (BMC Bioinform., 2014)

Comparing co-evolution methods and their application to template-free protein structure prediction. - Saulo Henrique Pires de Oliveira; Jiye Shi; Charlotte M. Deane (Bioinform., 2017)

Combining co-evolution and secondary structure prediction to improve fragment library generation. - Saulo Henrique Pires de Oliveira; Charlotte M. Deane (Bioinform., 2018)

Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction. - Saulo Henrique Pires de Oliveira; Eleanor C. Law; Jiye Shi; Charlotte M. Deane (Bioinform., 2018)

STCRDab: the structural T-cell receptor database. - Jinwoo Leem; Saulo Henrique Pires de Oliveira; Konrad Krawczyk; Charlotte M. Deane (Nucleic Acids Res., 2018)

Sequence-guided protein structure determination using graph convolutional and recurrent networks. - Po-Nan Li; Saulo Henrique Pires de Oliveira; Soichi Wakatsuki; Henry van den Bedem (BIBE, 2020)

The evolution of contact prediction: evidence that contact selection in statistical contact prediction is changing. - Mark Chonofsky; Saulo Henrique Pires de Oliveira; Konrad Krawczyk; Charlotte M. Deane (Bioinform., 2020)