Meta-analysis based on control of false discovery rate: combining yeast ChIP-chip datasets. - Saumyadipta Pyne; Bruce Futcher; Steven Skiena (Bioinform., 2006)

Identification of Differential Flow Cytometry Expression. - Elizabeth Rossin; Saumyadipta Pyne; Florian Hahne; Philip L. De Jager (BIBE, 2007)

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle. - Pierre R. Bushel; Nicholas A. Heard; Roee Gutman; Liwen Liu; Shyamal D. Peddada; Saumyadipta Pyne (BMC Syst. Biol., 2009)

Automated High-Dimensional Flow Cytometric Data Analysis. - Saumyadipta Pyne; Xinli Hu; Kui Wang; Elizabeth Rossin; Tsung-I Lin; Lisa Maier; Clare Baecher-Allan; Geoffrey J. McLachlan; Pablo Tamayo; David Hafler; Philip L. De Jager; Jill P. Mesirov (RECOMB, 2010)

Parametric modeling of cellular state transitions as measured with flow cytometry. - Saumyadipta Pyne; Steven B. Haase; Hsiu J. Ho; Tsung-I Lin (ICCABS, 2011)

A framework for analytical characterization of monoclonal antibodies based on reactivity profiles in different tissues. - Elizabeth Rossin; Tsung-I Lin; Hsiu J. Ho; Steven J. Mentzer; Saumyadipta Pyne (Bioinform., 2011)

Clustering with position-specific constraints on variance: Applying redescending M-estimators to label-free LC-MS data analysis. - Rudolf Frühwirth; Deepak R. Mani; Saumyadipta Pyne (BMC Bioinform., 2011)

Identification of Cell Cycle-Regulated, Putative Hyphal Genes in Candida Albicans. - Raluca Gordân; Saumyadipta Pyne; Martha L. Bulyk (Pacific Symposium on Biocomputing, 2012)

Matching phosphorylation response patterns of antigen-receptor-stimulated T cells via flow cytometry. - Ariful Azad; Saumyadipta Pyne; Alex Pothen (BMC Bioinform., 2012)

Parametric modeling of cellular state transitions as measured with flow cytometry. - Hsiu J. Ho; Tsung-I Lin; Hannah H. Chang; Steven B. Haase; Sui Huang; Saumyadipta Pyne (BMC Bioinform., 2012)

Maximum likelihood inference for mixtures of skew Student-t-normal distributions through practical EM-type algorithms. - Hsiu J. Ho; Saumyadipta Pyne; Tsung-I Lin (Stat. Comput., 2012)

Classifying Immunophenotypes With Templates From Flow Cytometry. - Ariful Azad; Arif M. Khan; Bartek Rajwa; Saumyadipta Pyne; Alex Pothen (BCB, 2013)

Parallel deterministic annealing clustering and its application to LC-MS data analysis. - Geoffrey C. Fox; Deepak R. Mani; Saumyadipta Pyne (IEEE BigData, 2013)

An empirical Bayes approach for analysis of diverse periodic trends in time-course gene expression data. - Mehmet Kocak; E. Olusegun George; Saumyadipta Pyne; Stanley Pounds (Bioinform., 2013)

Linear combination test for gene set analysis of a continuous phenotype. - Irina Dinu; Xiaoming Wang; Linda E. Kelemen; Shabnam Vatanpour; Saumyadipta Pyne (BMC Bioinform., 2013)

Gene set enrichment analysis for multiple continuous phenotypes. - Xiaoming Wang; Saumyadipta Pyne; Irina Dinu (BMC Bioinform., 2014)

HiPC 2016 Workshop 1: International Workshop on Foundations of Big Data Computing (BigDF). - Madhu Govindaraju; Saumyadipta Pyne (HiPC Workshops, 2016)

Partial identification in the statistical matching problem. - Daniel Ahfock; Saumyadipta Pyne; Sharon X. Lee; Geoffrey J. McLachlan (Comput. Stat. Data Anal., 2016)

Association between bivariate expression of key oncogenes and metabolic phenotypes of patients with prostate cancer. - Elham Khodayari Moez; Saumyadipta Pyne; Irina Dinu (Comput. Biol. Medicine, 2018)

Gene set analysis and reduction for a continuous phenotype: Identifying markers of birth weight variation based on embryonic stem cells and immunologic signatures. - Shabnam Vatanpour; Saumyadipta Pyne; Ana Paula Leite; Irina Dinu (Comput. Biol. Medicine, 2019)

AICov: An Integrative Deep Learning Framework for COVID-19 Forecasting with Population Covariates. - Geoffrey C. Fox; Gregor von Laszewski; Fugang Wang; Saumyadipta Pyne (CoRR, 2020)

Multivariate Tail Probabilities: Predicting Regional Pertussis Cases in Washington State. - Xuze Zhang; Saumyadipta Pyne; Benjamin Kedem (Entropy, 2021)

Data fusion using factor analysis and low-rank matrix completion. - Daniel Ahfock; Saumyadipta Pyne; Geoffrey J. McLachlan (Stat. Comput., 2021)

Systematic mining of patterns of polysubstance use in a nationwide population survey. - Sumanta Ray; Meghana Desai; Saumyadipta Pyne (Comput. Biol. Medicine, 2022)

Statistical file-matching of non-Gaussian data: A game theoretic approach. - Daniel Ahfock; Saumyadipta Pyne; Geoffrey J. McLachlan (Comput. Stat. Data Anal., 2022)