Regression Analysis of Multiple Protein Structures. - Thomas D. Wu; Scott C. Schmidler; Trevor Hastie; Douglas L. Brutlag (J. Comput. Biol., 1998)

Bayesian Segmentation of Protein Secondary Structure. - Scott C. Schmidler; Jun S. Liu; Douglas L. Brutlag (J. Comput. Biol., 2000)

How to Dispatch Observers to Track an Evolving Boundary. - Tingting Jiang 001; Carlo Tomasi; Scott C. Schmidler (ICDSC, 2007)

Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction. - Scott C. Schmidler; Joseph E. Lucas; Terrence G. Oas (J. Comput. Biol., 2007)

Bayesian Multiple Protein Structure Alignment. - Rui Wang; Scott C. Schmidler (RECOMB, 2014)

Tree Topology Estimation. - Rolando Estrada; Carlo Tomasi; Scott C. Schmidler; Sina Farsiu (IEEE Trans. Pattern Anal. Mach. Intell., 2015)

Drivers of Inter-individual Variation in Dengue Viral Load Dynamics. - Rotem Ben-Shachar; Scott C. Schmidler; Katia Koelle (PLoS Comput. Biol., 2016)

Modeling Dependence in Evolutionary Inference for Proteins. - Gary Larson; Jeffrey L. Thorne; Scott C. Schmidler (RECOMB, 2018)

Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models. - Gary Larson; Jeffrey L. Thorne; Scott C. Schmidler (J. Comput. Biol., 2020)

A Bayesian non-parametric mixed-effects model of microbial growth curves. - Peter D. Tonner; Cynthia L. Darnell; Francesca M. L. Bushell; Peter A. Lund; Amy K. Schmid; Scott C. Schmidler (PLoS Comput. Biol., 2020)

Minimax Mixing Time of the Metropolis-Adjusted Langevin Algorithm for Log-Concave Sampling. - Keru Wu; Scott C. Schmidler; Yuansi Chen (J. Mach. Learn. Res., 2022)