ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data. - Olivier Arnaiz; Scott Cain; Jean Cohen; Linda Sperling (Nucleic Acids Res., 2007)

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. - Sook Jung; Naama Menda; Seth Redmond; Robert M. Buels; Maren Friesen; Yuri R. Bendaña; Lacey-Anne Sanderson; Hilmar Lapp; Taein Lee; Bob MacCallum; Kirstin E. Bett; Scott Cain; et al. (Database J. Biol. Databases Curation, 2011)

WormBase 2016: expanding to enable helminth genomic research. - Kevin L. Howe; Bruce J. Bolt; Scott Cain; Juancarlos Chan; Wen J. Chen; Paul Davis 001; James Done; Thomas A. Down; Sibyl Gao; Christian A. Grove; Todd W. Harris; Ranjana Kishore; et al. (Nucleic Acids Res., 2016)

WormBase 2017: molting into a new stage. - Raymond Y. N. Lee; Kevin L. Howe; Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Hans-Michael Müller; et al. (Nucleic Acids Res., 2018)

Alliance of Genome Resources Portal: unified model organism research platform. - Julie Agapite; Laurent-Philippe Albou; Suzi A. Aleksander; Joanna Argasinska; Valerio Arnaboldi; Helen Attrill; Susan M. Bello; Judith A. Blake; Olin Blodgett; Yvonne M. Bradford; Carol J. Bult; Scott Cain; et al. (Nucleic Acids Res., 2020)

WormBase: a modern Model Organism Information Resource. - Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Jae-Hyoung Cho; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Raymond Y. N. Lee; Hans-Michael Müller; et al. (Nucleic Acids Res., 2020)

JBrowse Jupyter: a Python interface to JBrowse 2. - Teresa De Jesus Martinez; Elliot A. Hershberg; Emma Guo; Garrett Stevens; Colin M. Diesh; Peter Xie; Caroline Bridge; Scott Cain; Robin Haw; Robert M. Buels; Lincoln D. Stein; Ian H. Holmes (Bioinform., 2023)

FAIR Header Reference genome: a TRUSTworthy standard. - Adam Wright; Mark D. Wilkinson; Christopher J. Mungall; Scott Cain; Stephen Richards; Paul W. Sternberg; Ellen Provin; Jonathan L. Jacobs; Scott Geib; Daniela Raciti; Karen Yook; Lincoln Stein; et al. (Briefings Bioinform., 2024)