Identifying specificity groups in the T cell receptor repertoire. - Jacob Glanville; Huang Huang; Allison Nau; Olivia Hatton; Lisa E. Wagar; Florian Rubelt; Xuhuai Ji; Arnold Han; Sheri M. Krams; Christina Pettus; Nikhil Haas; Cecilia S. Lindestam Arlehamn; et al. (Nat., 2017)

VDJbase: an adaptive immune receptor genotype and haplotype database. - Aviv Omer; Or Shemesh; Ayelet Peres; Pazit Polak; Adrian J. Shepherd; Corey T. Watson; Scott D. Boyd; Andrew M. Collins; William D. Lees; Gur Yaari (Nucleic Acids Res., 2020)

Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets. - Jia Zhao; Gefei Wang; Jingsi Ming; Zhixiang Lin; Yang Wang; Snigdha Agarwal; Aditi Agrawal; Ahmad Al-Moujahed; Alina Alam; Megan A. Albertelli; Paul Allegakoen; Thomas Ambrosi; et al. (Nat. Comput. Sci., 2022)

Sequence-Based TCR-Peptide Representations Using Cross-Epitope Contrastive Fine-Tuning of Protein Language Models. - Chiho Im; Ryan Zhao; Scott D. Boyd; Anshul Kundaje (RECOMB, 2025)