Predicting CNS Permeability of Drug Molecules: Comparison of Neural Network and Support Vector Machine Algorithms. - Scott Doniger; Thomas Hofmann; Miao-Hui Joanne Yeh (J. Comput. Biol., 2002)

GenMAPP 2: new features and resources for pathway analysis. - Nathan Salomonis; Kristina Hanspers; Alexander C. Zambon; Karen Vranizan; Steven C. Lawlor; Kam D. Dahlquist; Scott Doniger; Joshua M. Stuart; Bruce R. Conklin; Alexander R. Pico (BMC Bioinform., 2007)

Frequent Gain and Loss of Functional Transcription Factor Binding Sites. - Scott Doniger; Justin C. Fay (PLoS Comput. Biol., 2007)