Analysis and visualization of functional relationships between RNA expression and clinical annotation using PathlinX. - Scott L. Carter (AMIA, 2002)

Gene co-expression network topology provides a framework for molecular characterization of cellular state. - Scott L. Carter; Christian M. Brechbühler; Michael Griffin; Andrew T. Bond (Bioinform., 2004)

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. - Scott L. Carter; Aron C. Eklund; Brigham H. Mecham; Isaac S. Kohane; Zoltan Szallasi (BMC Bioinform., 2005)

CNGPLD: case-control copy-number analysis using Gaussian process latent difference. - David J. H. Shih; Ruoxing Li; Peter Müller; W. Jim Zheng; Kim-Anh Do; Shiaw-Yih Lin; Scott L. Carter (Bioinform., 2022)

Tangent normalization for somatic copy-number inference in cancer genome analysis. - Galen F. Gao; Coyin Oh; Gordon Saksena; Davy Deng; Lindsay C. Westlake; Barbara A. Hill; Michael Reich; Steven E. Schumacher; Ashton C. Berger; Scott L. Carter; Andrew D. Cherniack; Matthew Meyerson; et al. (Bioinform., 2022)