DAPPLE: a pipeline for the homology-based prediction of phosphorylation sites. - Brett Trost; Ryan Arsenault; Philip J. Griebel; Scott Napper; Anthony J. Kusalik (Bioinform., 2013)

Case study: using sequence homology to identify putative phosphorylation sites in an evolutionarily distant species (honeybee). - Brett Trost; Scott Napper; Anthony J. Kusalik (Briefings Bioinform., 2015)

EpIC: a rational pipeline for epitope immunogenicity characterization. - Kristen Marciniuk; Brett Trost; Scott Napper (Bioinform., 2015)

EPIphany - A Platform for Analysis and Visualization of Peptide Immunoarray Data. - Zoe Parker Cates; Antonio Facciuolo; Daniel J. Hogan; Philip J. Griebel; Scott Napper; Anthony J. Kusalik (Frontiers Bioinform., 2021)