Alpha-helical topology and tertiary structure prediction in globular proteins. - Scott R. McAllister; Christodoulos A. Floudas (CDC, 2007)

Global pairwise sequence alignment through mixed-integer linear programming: a template-free approach. - Scott R. McAllister; R. Rajgaria; Christodoulos A. Floudas (Optim. Methods Softw., 2007)

Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies. - Peter A. DiMaggio Jr.; Scott R. McAllister; Christodoulos A. Floudas; Xiao-Jiang Feng; Joshua D. Rabinowitz; Herschel Rabitz (BMC Bioinform., 2008)

Mathematical modeling and efficient optimization methods for the distance-dependent rearrangement clustering problem. - Scott R. McAllister; Peter A. DiMaggio Jr.; Christodoulos A. Floudas (J. Glob. Optim., 2009)

Enhanced bounding techniques to reduce the protein conformational search space. - Scott R. McAllister; Christodoulos A. Floudas (Optim. Methods Softw., 2009)

Predictive Method for Interhelical Contacts in Alpha-Helical Proteins. - Scott R. McAllister; Christodoulos A. Floudas (Encyclopedia of Optimization, 2009)

Global Pairwise Protein Sequence Alignment via Mixed-Integer Linear Optimization. - Scott R. McAllister; R. Rajgaria; Christodoulos A. Floudas (Encyclopedia of Optimization, 2009)

Distance Dependent Protein Force Field via Linear Optimization. - R. Rajgaria; Scott R. McAllister; Christodoulos A. Floudas (Encyclopedia of Optimization, 2009)

An improved hybrid global optimization method for protein tertiary structure prediction. - Scott R. McAllister; Christodoulos A. Floudas (Comput. Optim. Appl., 2010)

A network flow model for biclustering via optimal re-ordering of data matrices. - Peter A. DiMaggio Jr.; Scott R. McAllister; Christodoulos A. Floudas; Xiao-Jiang Feng; Joshua D. Rabinowitz; Herschel Rabitz (J. Glob. Optim., 2010)