Medusa: a simple tool for interaction graph analysis. - Sean D. Hooper; Peer Bork (Bioinform., 2005)

STRING: known and predicted protein-protein associations, integrated and transferred across organisms. - Christian von Mering; Lars Juhl Jensen; Berend Snel; Sean D. Hooper; Markus Krupp; Mathilde Foglierini; Nelly Jouffre; Martijn A. Huynen; Peer Bork (Nucleic Acids Res., 2005)

Annotation of metagenome short reads using proxygenes. - Daniel Dalevi; Natalia Ivanova; Konstantinos Mavrommatis; Sean D. Hooper; Ernest Szeto; Philip Hugenholtz; Nikos Kyrpides; Victor M. Markowitz (ECCB, 2008)

jClust: a clustering and visualization toolbox. - Georgios A. Pavlopoulos; Charalampos N. Moschopoulos; Sean D. Hooper; Reinhard Schneider 002; Sophia Kossida (Bioinform., 2009)

OnTheFly: a tool for automated document-based text annotation, data linking and network generation. - Georgios A. Pavlopoulos; Evangelos Pafilis; Michael Kuhn 004; Sean D. Hooper; Reinhard Schneider 002 (Bioinform., 2009)

Estimating DNA coverage and abundance in metagenomes using a gamma approximation. - Sean D. Hooper; Daniel Dalevi; Amrita Pati; Konstantinos Mavrommatis; Natalia Ivanova; Nikos Kyrpides (Bioinform., 2010)