Integration of information and volume visualization for analysis of cell lineage and gene expression during embryogenesis. - Andrej Cedilnik; Jeffrey Baumes; Luis Ibáñez; Sean Megason; Brian N. Wylie (Visualization and Data Analysis, 2008)

Variational level-set with gaussian shape model for cell segmentation. - Arnaud Gelas; Kishore Mosaliganti; Alexandre Gouaillard; Lydie Souhait; Ramil Noche; Nikolaus Obholzer; Sean G. Megason (ICIP, 2009)

Tissue Level Segmentation and Tracking of Biological Structures in Microscopic Images Based on Density Maps. - Kishore Mosaliganti; Arnaud Gelas; Alexandre Gouaillard; Nikolaus Obholzer; Ramil Noche; Sean Megason (ISBI, 2009)

Detection of Spatially Correlated Objects in 3D Images Using Appearance Models and Coupled Active Contours. - Kishore Mosaliganti; Arnaud Gelas; Alexandre Gouaillard; Ramil Noche; Nikolaus Obholzer; Sean Megason (MICCAI (1), 2009)

Anisotropic plate diffusion filtering for detection of cell membranes in 3D microscopy images. - Kishore Mosaliganti; Firdaus Janoos; Arnaud Gelas; Ramil Noche; Nikolaus Obholzer; Raghu Machiraju; Sean Megason (ISBI, 2010)

Current challenges in image analysis for in toto imaging of zebrafish. - Sean G. Megason (ISBI, 2011)

ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes. - Kishore R. Mosaliganti; Ramil R. Noche; Fengzhu Xiong; Ian A. Swinburne; Sean G. Megason (PLoS Comput. Biol., 2012)

An efficient, scalable, and adaptable framework for solving generic systems of level-set PDEs. - Kishore R. Mosaliganti; Arnaud Gelas; Sean G. Megason (Frontiers Neuroinformatics, 2013)