Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways. - Sean L. Seyler; Avishek Kumar; M. F. Thorpe; Oliver Beckstein (PLoS Comput. Biol., 2015)

datreant: persistent, Pythonic trees for heterogeneous data. - David L. Dotson; Sean L. Seyler; Max Linke; Richard J. Gowers; Oliver Beckstein (SciPy, 2016)

MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. - Richard J. Gowers; Max Linke; Jonathan Barnoud; Tyler J. E. Reddy; Manuel N. Melo; Sean L. Seyler; Jan J. Domanski; David L. Dotson; Sébastien Buchoux; Ian M. Kenney; Oliver Beckstein (SciPy, 2016)

Correction: Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways. - Sean L. Seyler; Avishek Kumar; M. F. Thorpe; Oliver Beckstein (PLoS Comput. Biol., 2019)