Classifying All Avoidable Sets of Partial Words of Size Two. - Francine Blanchet-Sadri; Brandon Blakeley; Josh Gunter; Sean Simmons 001; Eric Weissenstein (Scientific Applications of Language Methods, 2010)

Abelian Square-Free Partial Words. - Francine Blanchet-Sadri; Jane I. Kim; Robert Mercas; William Severa; Sean Simmons 001 (LATA, 2010)

Avoiding Abelian Powers in Partial Words. - Francine Blanchet-Sadri; Sean Simmons 001 (Developments in Language Theory, 2011)

Avoidable binary patterns in partial words. - Francine Blanchet-Sadri; Robert Mercas; Sean Simmons 001; Eric Weissenstein (Acta Informatica, 2011)

Abelian Pattern Avoidance in Partial Words. - Francine Blanchet-Sadri; Sean Simmons 001 (MFCS, 2012)

Abelian repetitions in partial words. - Francine Blanchet-Sadri; Sean Simmons 001; Dimin Xu (Adv. Appl. Math., 2012)

Erratum to: Avoidable binary patterns in partial words. - Francine Blanchet-Sadri; Robert Mercas; Sean Simmons 001; Eric Weissenstein (Acta Informatica, 2012)

Avoiding abelian squares in partial words. - Francine Blanchet-Sadri; Jane I. Kim; Robert Mercas; William Severa; Sean Simmons 001; Dimin Xu (J. Comb. Theory A, 2012)

Counting minimal semi-Sturmian words. - Francine Blanchet-Sadri; Sean Simmons 001 (Discret. Appl. Math., 2013)

Abelian periods, partial words, and an extension of a theorem of Fine and Wilf. - Francine Blanchet-Sadri; Sean Simmons 001; Amelia Tebbe; Amy Veprauskas (RAIRO Theor. Informatics Appl., 2013)

Deciding representability of sets of words of equal length. - Francine Blanchet-Sadri; Sean Simmons 001 (Theor. Comput. Sci., 2013)

Computing Depths of Patterns. - Francine Blanchet-Sadri; Andrew Lohr; Sean Simmons 001; Brent Woodhouse (LATA, 2014)

Abelian pattern avoidance in partial words. - Francine Blanchet-Sadri; Benjamin De Winkle; Sean Simmons 001 (RAIRO Theor. Informatics Appl., 2014)

One Size Doesn't Fit All: Measuring Individual Privacy in Aggregate Genomic Data. - Sean Simmons 001; Bonnie Berger (IEEE Symposium on Security and Privacy Workshops, 2015)

Discovering What Dimensionality Reduction Really Tells Us About RNA-Seq Data. - Sean Simmons 001; Jian Peng 001; Jadwiga R. Bienkowska; Bonnie Berger (J. Comput. Biol., 2015)

Enabling Privacy Preserving GWAS in Heterogeneous Human Populations. - Sean Simmons 001; S. Cenk Sahinalp; Bonnie Berger (RECOMB, 2016)

Realizing privacy preserving genome-wide association studies. - Sean Simmons 001; Bonnie Berger (Bioinform., 2016)

Protecting Genomic Data Privacy with Probabilistic Modeling. - Sean Simmons 001; Bonnie Berger; S. Cenk Sahinalp (PSB, 2019)

Privacy-Preserving Biomedical Database Queries with Optimal Privacy-Utility Trade-Offs. - Hyunghoon Cho; Sean Simmons 001; Ryan Kim; Bonnie Berger (RECOMB, 2020)