Improvements to Burrows-Wheeler compression algorithm. - Sebastian Deorowicz (Softw. Pract. Exp., 2000)

How to squeeze a lexicon. - Marcin Ciura; Sebastian Deorowicz (Softw. Pract. Exp., 2001)

Second step algorithms in the Burrows-Wheeler compression algorithm. - Sebastian Deorowicz (Softw. Pract. Exp., 2002)

Context exhumation after the Burrows-Wheeler transform. - Sebastian Deorowicz (Inf. Process. Lett., 2005)

Revisiting dictionary-based compression. - Przemyslaw Skibinski; Szymon Grabowski; Sebastian Deorowicz (Softw. Pract. Exp., 2005)

Speeding up transposition-invariant string matching. - Sebastian Deorowicz (Inf. Process. Lett., 2006)

Efficient Preprocessing for Web Log Compression. - Sebastian Deorowicz; Szymon Grabowski (Int. J. Comput., 2008)

Computing the Longest Common Transposition-Invariant Subsequence with GPU. - Sebastian Deorowicz (ICMMI, 2009)

On Two Variants of the Longest Increasing Subsequence Problem. - Sebastian Deorowicz; Szymon Grabowski (ICMMI, 2009)

A hybrid algorithm for the longest common transposition-invariant subsequence problem. - Sebastian Deorowicz; Szymon Grabowski (Comput. Informatics, 2009)

An algorithm for solving the longest increasing circular subsequence problem. - Sebastian Deorowicz (Inf. Process. Lett., 2009)

Constrained Longest Common Subsequence Computing Algorithms in Practice. - Sebastian Deorowicz; Joanna Obstój (Comput. Informatics, 2010)

Bit-Parallel Algorithm for the Constrained Longest Common Subsequence Problem. - Sebastian Deorowicz (Fundam. Informaticae, 2010)

Solving longest common subsequence and related problems on graphical processing units. - Sebastian Deorowicz (Softw. Pract. Exp., 2010)

A Parallel GPU-Designed Algorithm for the Constrained Multiple Sequence Alignment Problem. - Adam Gudys; Sebastian Deorowicz (ICMMI, 2011)

Efficient Representation of Transition Matrix in the Markov Process Modeling of Computer Networks. - Piotr Pecka; Sebastian Deorowicz; Mateusz Nowak 001 (ICMMI, 2011)

Compression of DNA sequence reads in FASTQ format. - Sebastian Deorowicz; Szymon Grabowski (Bioinform., 2011)

Robust relative compression of genomes with random access. - Sebastian Deorowicz; Szymon Grabowski (Bioinform., 2011)

Engineering Relative Compression of Genomes - Szymon Grabowski; Sebastian Deorowicz (CoRR, 2011)

A Cover-Merging-Based Algorithm for the Longest Increasing Subsequence in a Sliding Window Problem. - Sebastian Deorowicz (Comput. Informatics, 2012)

A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem Designed for GPUs. - Adam Gudys; Sebastian Deorowicz (Int. J. Found. Comput. Sci., 2012)

Quadratic-time algorithm for a string constrained LCS problem. - Sebastian Deorowicz (Inf. Process. Lett., 2012)

miRNEST database: an integrative approach in microRNA search and annotation. - Michal Wojciech Szczesniak; Sebastian Deorowicz; Jakub Gapski; Lukasz Kaczynski; Izabela Makalowska (Nucleic Acids Res., 2012)

Bit-Parallel Algorithm for the Block Variant of the Merged Longest Common Subsequence Problem. - Agnieszka Danek; Sebastian Deorowicz (ICMMI, 2013)

Kalign-LCS - A More Accurate and Faster Variant of Kalign2 Algorithm for the Multiple Sequence Alignment Problem. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys (ICMMI, 2013)

Subcubic Algorithms for the Sequence Excluded LCS Problem. - Sebastian Deorowicz; Szymon Grabowski (ICMMI, 2013)

Fast and Simple Circular Pattern Matching. - Robert Susik; Szymon Grabowski; Sebastian Deorowicz (ICMMI, 2013)

Data compression for sequencing data. - Sebastian Deorowicz; Szymon Grabowski (Algorithms Mol. Biol., 2013)

Genome compression: a novel approach for large collections. - Sebastian Deorowicz; Agnieszka Danek; Szymon Grabowski (Bioinform., 2013)

Disk-based k-mer counting on a PC. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Szymon Grabowski (BMC Bioinform., 2013)

Bit-Parallel Algorithms for the Merged Longest Common Subsequence Problem. - Sebastian Deorowicz; Agnieszka Danek (Int. J. Found. Comput. Sci., 2013)

An Improved Algorithm for Fast and Accurate Classification of Sequences. - Jolanta Kawulok; Sebastian Deorowicz (BDAS, 2014)

An Effective Way of Storing and Accessing Very Large Transition Matrices Using Multi-core CPU and GPU Architectures. - Bozena Wieczorek; Marcin Polomski; Piotr Pecka; Sebastian Deorowicz (BDAS, 2014)

DSRC 2 - Industry-oriented compression of FASTQ files. - Lukasz Roguski; Sebastian Deorowicz (Bioinform., 2014)

Indexing large genome collections on a PC. - Agnieszka Danek; Sebastian Deorowicz; Szymon Grabowski (CoRR, 2014)

KMC 2: Fast and resource-frugal k-mer counting. - Sebastian Deorowicz; Marek Kokot; Szymon Grabowski; Agnieszka Debudaj-Grabysz (CoRR, 2014)

Disk-based genome sequencing data compression. - Szymon Grabowski; Sebastian Deorowicz; Lukasz Roguski (CoRR, 2014)

Efficient algorithms for the longest common subsequence in k-length substrings. - Sebastian Deorowicz; Szymon Grabowski (Inf. Process. Lett., 2014)

KMC 2: fast and resource-frugal k-mer counting. - Sebastian Deorowicz; Marek Kokot; Szymon Grabowski; Agnieszka Debudaj-Grabysz (Bioinform., 2015)

Disk-based compression of data from genome sequencing. - Szymon Grabowski; Sebastian Deorowicz; Lukasz Roguski (Bioinform., 2015)

GDC 2: Compression of large collections of genomes. - Sebastian Deorowicz; Agnieszka Danek; Marcin Niemiec (CoRR, 2015)

QuickProbs 2: towards rapid construction of high-quality alignments of large protein families. - Adam Gudys; Sebastian Deorowicz (CoRR, 2015)

Indexing arbitrary-length k-mers in sequencing reads. - Tomasz Marek Kowalski; Szymon Grabowski; Sebastian Deorowicz (CoRR, 2015)

Comment on: 'ERGC: an efficient referential genome compression algorithm'. - Sebastian Deorowicz; Szymon Grabowski; Idoia Ochoa; Mikel Hernaez; Tsachy Weissman (Bioinform., 2016)

Aligning 415 519 proteins in less than two hours on PC. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys (CoRR, 2016)

FM-index for Dummies. - Szymon Grabowski; Marcin Raniszewski; Sebastian Deorowicz (BDAS, 2017)

Sorting Data on Ultra-Large Scale with RADULS - New Incarnation of Radix Sort. - Marek Kokot; Sebastian Deorowicz; Agnieszka Debudaj-Grabysz (BDAS, 2017)

Improvements in DNA Reads Correction. - Maciej Dlugosz; Sebastian Deorowicz; Marek Kokot (ICMMI, 2017)

Even Faster Sorting of (Not Only) Integers. - Marek Kokot; Sebastian Deorowicz; Maciej Dlugosz (ICMMI, 2017)

RECKONER: read error corrector based on KMC. - Maciej Dlugosz; Sebastian Deorowicz (Bioinform., 2017)

KMC 3: counting and manipulating k-mer statistics. - Marek Kokot; Maciej Dlugosz; Sebastian Deorowicz (Bioinform., 2017)

Even better correction of genome sequencing data. - Maciej Dlugosz; Sebastian Deorowicz; Marek Kokot (CoRR, 2017)

GTC: how to maintain huge genotype collections in a compressed form. - Agnieszka Danek; Sebastian Deorowicz (Bioinform., 2018)

FaStore: a space-saving solution for raw sequencing data. - Lukasz Roguski; Idoia Ochoa; Mikel Hernaez; Sebastian Deorowicz (Bioinform., 2018)

GTShark: genotype compression in large projects. - Sebastian Deorowicz; Agnieszka Danek (Bioinform., 2019)

Whisper: read sorting allows robust mapping of DNA sequencing data. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys; Szymon Grabowski (Bioinform., 2019)

Kmer-db: instant evolutionary distance estimation. - Sebastian Deorowicz; Adam Gudys; Maciej Dlugosz; Marek Kokot; Agnieszka Danek (Bioinform., 2019)

CoMSA: compression of protein multiple sequence alignment files. - Sebastian Deorowicz; Joanna Walczyszyn; Agnieszka Debudaj-Grabysz (Bioinform., 2019)

VCFShark: how to squeeze a VCF file. - Sebastian Deorowicz; Agnieszka Danek; Marek Kokot (Bioinform., 2021)

Whisper 2: Indel-sensitive short read mapping. - Sebastian Deorowicz; Adam Gudys (SoftwareX, 2021)

The K-mer File Format: a standardized and compact disk representation of sets of k-mers. - Yoann Dufresne; Téo Lemane; Pierre Marijon; Pierre Peterlongo; Amatur Rahman; Marek Kokot; Paul Medvedev; Sebastian Deorowicz; Rayan Chikhi (Bioinform., 2022)

PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences. - Andrzej Zielezinski; Sebastian Deorowicz; Adam Gudys (Bioinform., 2022)

AGC: compact representation of assembled genomes with fast queries and updates. - Sebastian Deorowicz; Agnieszka Danek; Heng Li (Bioinform., 2023)

Efficient protein structure archiving using ProteStAr. - Sebastian Deorowicz; Adam Gudys (Bioinform., 2024)