Stability in Flux - Group Dynamics in Adaptive Networks. - Nicholas Geard; John Bryden; Sebastian Funk; Vincent A. A. Jansen; Seth Bullock (ALIFE, 2010)

Word usage mirrors community structure in the online social network Twitter. - John Bryden; Sebastian Funk; Vincent A. A. Jansen (EPJ Data Sci., 2013)

Identifying Transmission Cycles at the Human-Animal Interface: The Role of Animal Reservoirs in Maintaining Gambiense Human African Trypanosomiasis. - Sebastian Funk; Hiroshi Nishiura; Hans Heesterbeek; W. John Edmunds; Francesco Checchi (PLoS Comput. Biol., 2013)

A mechanistic spatio-temporal framework for modelling individual-to-individual transmission - With an application to the 2014-2015 West Africa Ebola outbreak. - Max S. Y. Lau; Gavin J. Gibson; Hola Adrakey; Amanda McClelland; Steven Riley; Jon Zelner; George Streftaris; Sebastian Funk; C. Jessica E. Metcalf; Benjamin D. Dalziel; Bryan T. Grenfell (PLoS Comput. Biol., 2017)

Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15. - Akira Endo; Mitsuo Uchida; Adam J. Kucharski; Sebastian Funk (PLoS Comput. Biol., 2019)

Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15. - Sebastian Funk; Anton Camacho; Adam J. Kucharski; Rachel Lowe; Rosalind M. Eggo; W. John Edmunds (PLoS Comput. Biol., 2019)

Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2020)

o2geosocial: Reconstructing who-infected-whom from routinely collected surveillance data. - Alexis Robert; Sebastian Funk; Adam J. Kucharski (F1000Research, 2021)

covidregionaldata: Subnational data for COVID-19 epidemiology. - Joseph Palmer; Katharine Sherratt; Richard Martin-Nielson; Jonnie Bevan; Hamish Gibbs; LSHTM CMMID COVID-19 Working Group; Sebastian Funk; Sam Abbott (J. Open Source Softw., 2021)

Correction: Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2021)

Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics. - Christopher I. Jarvis; Amy Gimma; Flavio Finger; Tim P. Morris; Jennifer A. Thompson; Olivier Le Polain de Waroux; W. John Edmunds; Sebastian Funk; Thibaut Jombart (PLoS Comput. Biol., 2022)

Comparing human and model-based forecasts of COVID-19 in Germany and Poland. - Nikos I. Bosse; Sam Abbott; Johannes Bracher; Habakuk Hain; Billy J. Quilty; Mark Jit; Edwin van Leeuwen; Anne Cori; Sebastian Funk (PLoS Comput. Biol., 2022)

Scoring epidemiological forecasts on transformed scales. - Nikos I. Bosse; Sam Abbott; Anne Cori; Edwin van Leeuwen; Johannes Bracher; Sebastian Funk (PLoS Comput. Biol., 2023)

Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England. - James D. Munday; Sam Abbott; Sophie Meakin; Sebastian Funk (PLoS Comput. Biol., 2023)

Collaborative nowcasting of COVID-19 hospitalization incidences in Germany. - Daniel Wolffram; Sam Abbott; Matthias an der Heiden; Sebastian Funk; Felix Günther 003; Davide Hailer; Stefan Heyder; Thomas Hotz; Jan van de Kassteele; Helmut Küchenhoff; Sören Müller-Hansen; Diellë Syliqi; et al. (PLoS Comput. Biol., 2023)

Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany. - Elisabeth K. Brockhaus; Daniel Wolffram; Tanja Stadler; Michael Osthege; Tanmay Mitra; Jonas M. Littek; Ekaterina A. Krymova; Anna J. Klesen; Jana S. Huisman; Stefan Heyder; Laura Marie Helleckes; Matthias an der Heiden; et al. (PLoS Comput. Biol., 2023)

Live Product Line Engineering Using Density-Based Clustering of CAD Models. - Sebastian Funk; Christoph Legat; Axel Busboom (IEA/AIE, 2024)

Best practices for estimating and reporting epidemiological delay distributions of infectious diseases. - Kelly Charniga; Sang Woo Park; Andrei R. Akhmetzhanov; Anne Cori; Jonathan Dushoff; Sebastian Funk; Katelyn M. Gostic; Natalie M. Linton; Adrian Lison; Christopher E. Overton; Juliet R. C. Pulliam; Thomas Ward; et al. (PLoS Comput. Biol., 2024)