Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. - Jochen Blom; Tobias Jakobi; Daniel Doppmeier; Sebastian Jaenicke; Jörn Kalinowski; Jens Stoye; Alexander Goesmann (Bioinform., 2011)

ReadXplorer 2 - detailed read mapping analysis and visualization from one single source. - Rolf Hilker; Kai Bernd Stadermann; Oliver Schwengers; Evgeny Anisiforov; Sebastian Jaenicke; Bernd Weisshaar; Tobias Zimmermann; Alexander Goesmann (Bioinform., 2016)

Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data. - Patrick Blumenkamp; Max Pfister; Sonja Diedrich; Karina Brinkrolf; Sebastian Jaenicke; Alexander Goesmann (BMC Bioinform., 2024)