Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-, NMT and PTS1. - Frank Eisenhaber; Birgit Eisenhaber; Werner Kubina; Sebastian Maurer-Stroh; Georg Neuberger; Georg Schneider 001; Michael Wildpaner (Nucleic Acids Res., 2003)

SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs. - Joke Reumers; Sebastian Maurer-Stroh; Joost Schymkowitz; Frederic Rousseau 001 (Bioinform., 2006)

Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins. - Sebastian Maurer-Stroh; Manfred Koranda; Wolfgang Benetka; Georg Schneider 001; Fernanda L. Sirota; Frank Eisenhaber (PLoS Comput. Biol., 2007)

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases. - Joke Reumers; Lucía Conde; Ignacio Medina; Sebastian Maurer-Stroh; Joost J. J. van Durme; Joaquín Dopazo; Frederic Rousseau 001; Joost Schymkowitz (Nucleic Acids Res., 2008)

ANNIE: integrated de novo protein sequence annotation. - Hong Sain Ooi; Chia Yee Kwoh; Michael Wildpaner; Fernanda L. Sirota; Birgit Eisenhaber; Sebastian Maurer-Stroh; Wing-Cheong Wong; Alexander Schleiffer; Frank Eisenhaber; Georg Schneider 001 (Nucleic Acids Res., 2009)

Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data. - Joost J. J. van Durme; Sebastian Maurer-Stroh; Rodrigo Gallardo; Hannah Wilkinson; Frederic Rousseau 001; Joost Schymkowitz (PLoS Comput. Biol., 2009)

Is Lgi2 the Candidate Gene for Partial Epilepsy with Pericentral Spikes? - Vachiranee Limviphuvadh; Ling Ling Chua; Frank Eisenhaber; Sharmila Adhikari; Sebastian Maurer-Stroh (J. Bioinform. Comput. Biol., 2010)

More Than 1, 001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Frank Eisenhaber (PLoS Comput. Biol., 2010)

The Janus-Faced E-Values of Hmmer2: Extreme Value Distribution or logistic Function? - Wing-Cheong Wong; Sebastian Maurer-Stroh; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2011)

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude. - Joshua Tan 001; Durga Kuchibhatla; Fernanda L. Sirota; Westley A. Sherman; Tobias Gattermayer; Chia Yee Kwoh; Frank Eisenhaber; Georg Schneider 001; Sebastian Maurer-Stroh (Bioinform., 2012)

Beware of Moving targets: Reference proteome Content Fluctuates substantially over the Years. - Fernanda L. Sirota; Arsen O. Batagov; Georg Schneider 001; Birgit Eisenhaber; Frank Eisenhaber; Sebastian Maurer-Stroh (J. Bioinform. Comput. Biol., 2012)

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants. - Greet De Baets; Joost J. J. van Durme; Joke Reumers; Sebastian Maurer-Stroh; Peter Vanhee; Joaquín Dopazo; Joost Schymkowitz; Frederic Rousseau 001 (Nucleic Acids Res., 2012)

Transmembrane helix: simple or complex. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Georg Schneider 001; Frank Eisenhaber (Nucleic Acids Res., 2012)

How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. - Vladimir A. Kuznetsov; Hwee Kuan Lee; Sebastian Maurer-Stroh; Maria Judit Molnár; Sándor Pongor; Birgit Eisenhaber; Frank Eisenhaber (Health Inf. Sci. Syst., 2013)

Automatic phylogenetic Classification of bacterial beta-Lactamase Sequences including Structural and Antibiotic substrate Preference Information. - Jianmin Ma; Frank Eisenhaber; Sebastian Maurer-Stroh (J. Bioinform. Comput. Biol., 2013)

Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. - Sebastian Maurer-Stroh; He Gao; Hao Han; Lies Baeten; Joost Schymkowitz; Frederic Rousseau 001; Louxin Zhang; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2013)

A Simple Shortcut to Unsupervised Alignment-Free phylogenetic genome Groupings, even from Unassembled sequencing reads. - Sebastian Maurer-Stroh; Vithiagaran Gunalan; Wing-Cheong Wong; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2013)

Recognizing flu-like symptoms from videos. - Tuan Hue Thi; Li Wang 033; Ning Ye; Jian Zhang 002; Sebastian Maurer-Stroh; Li Cheng 001 (BMC Bioinform., 2014)

On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation. - Wing-Cheong Wong; Sebastian Maurer-Stroh; Birgit Eisenhaber; Frank Eisenhaber (BMC Bioinform., 2014)

HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes. - Westley Arthur Sherman; Durga Kuchibhatla; Vachiranee Limviphuvadh; Sebastian Maurer-Stroh; Birgit Eisenhaber; Frank Eisenhaber (J. Bioinform. Comput. Biol., 2015)

Discovery of Influenza A Virus Sequence Pairs and Their Combinations for Simultaneous Heterosubtypic Targeting that Hedge against Antiviral Resistance. - Keng Boon Wee; Raphael Tze Chuen Lee; Jing Lin; Zacharias Aloysius Dwi Pramono; Sebastian Maurer-Stroh (PLoS Comput. Biol., 2016)

Synthesizing retinal and neuronal images with generative adversarial nets. - He Zhao 002; Huiqi Li; Sebastian Maurer-Stroh; Li Cheng 001 (Medical Image Anal., 2018)

AllerCatPro - prediction of protein allergenicity potential from the protein sequence. - Sebastian Maurer-Stroh; Nora L. Krutz; Petra S. Kern; Vithiagaran Gunalan; Minh N. Nguyen; Vachiranee Limviphuvadh; Frank Eisenhaber; G. Frank Gerberick (Bioinform., 2019)

Supervised Segmentation of Un-Annotated Retinal Fundus Images by Synthesis. - He Zhao 002; Huiqi Li; Sebastian Maurer-Stroh; Yuhong Guo; Qiuju Deng; Li Cheng 001 (IEEE Trans. Medical Imaging, 2019)

AllerCatPro 2.0: a web server for predicting protein allergenicity potential. - Minh N. Nguyen; Nora L. Krutz; Vachiranee Limviphuvadh; Andreas L. Lopata; G. Frank Gerberick; Sebastian Maurer-Stroh (Nucleic Acids Res., 2022)

Towards multi-omics synthetic data integration. - Kumar Selvarajoo; Sebastian Maurer-Stroh (Briefings Bioinform., 2024)

Investigating the effectiveness of multimodal data in forecasting SARS-COV-2 case surges. - Palur Venkata Raghuvamsi; Brandon Siyuan Loh; Prasanta Bhattacharya; Joses Ho; Raphael Tze Chuen Lee; Alvin X. Han; Sebastian Maurer-Stroh (CoRR, 2025)