An Elementary View on Factorization Machines. - Sebastian Prillo (RecSys, 2017)

SoftSort: A Continuous Relaxation for the argsort Operator. - Sebastian Prillo; Julian Martin Eisenschlos (ICML, 2020)

Ultrafast classical phylogenetic method beats large protein language models on variant effect prediction. - Sebastian Prillo; Wilson Wu; Yun Song (NeurIPS, 2024)

Tree Reconstruction Guarantees from CRISPR-Cas9 Lineage Tracing Data Using Neighbor-Joining. - Sebastian Prillo; Kevin An; Wilson Wu; Ivan Kristanto; Matthew G. Jones; Yun S. Song; Nir Yosef (RECOMB, 2025)