A greedy, graph-based algorithm for the alignment of multiple homologous gene lists. - Jan Fostier; Sebastian Proost; Bart Dhoedt; Yvan Saeys; Piet Demeester; Yves Van de Peer; Klaas Vandepoele (Bioinform., 2011)

PLAZA 3.0: an access point for plant comparative genomics. - Sebastian Proost; Michiel Van Bel; Dries Vaneechoutte; Yves Van de Peer; Dirk Inzé; Bernd Mueller-Roeber; Klaas Vandepoele (Nucleic Acids Res., 2015)

LSTrAP: efficiently combining RNA sequencing data into co-expression networks. - Sebastian Proost; Agnieszka Krawczyk; Marek Mutwil (BMC Bioinform., 2017)

PhytoNet: comparative co-expression network analyses across phytoplankton and land plants. - Camilla Ferrari; Sebastian Proost; Colin Ruprecht; Marek Mutwil (Nucleic Acids Res., 2018)

CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses. - Sebastian Proost; Marek Mutwil (Nucleic Acids Res., 2018)