Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression. - Sébastien Lemieux (BMC Bioinform., 2006)

Optimization/simulation-based framework for the evaluation of supply chain management policies in the forest product industry. - Wassim Jerbi; Jonathan Gaudreault; Sophie D'Amours; Mustapha Nourelfath; Sébastien Lemieux; Philippe Marier; Mathieu Bouchard (SMC, 2012)

Correction of Spatial Bias in Oligonucleotide Array Data. - Philippe Serhal; Sébastien Lemieux (Adv. Bioinformatics, 2013)

Harnessing virtual machines to simplify next-generation DNA sequencing analysis. - Julie Nocq; Magalie Celton; Patrick Gendron; Sébastien Lemieux; Brian T. Wilhelm (Bioinform., 2013)

pyGeno: A Python package for precision medicine and proteogenomics. - Tariq Daouda; Claude Perreault; Sébastien Lemieux (F1000Research, 2016)

Warp: a method for neural network interpretability applied to gene expression profiles. - Assya Trofimov; Sébastien Lemieux; Claude Perreault (CoRR, 2017)

Holographic Neural Architectures. - Tariq Daouda; Jeremie Zumer; Claude Perreault; Sébastien Lemieux (CoRR, 2018)

Towards the Latent Transcriptome. - Assya Trofimov; Francis Dutil; Claude Perreault; Sébastien Lemieux; Yoshua Bengio; Joseph Paul Cohen (CoRR, 2018)

Enhancing the drug discovery process: Bayesian inference for the analysis and comparison of dose-response experiments. - Caroline Labelle; Anne Marinier; Sébastien Lemieux (Bioinform., 2019)

The TCGA Meta-Dataset Clinical Benchmark. - Mandana Samiei; Tobias Würfl; Tristan Deleu; Martin Weiss; Francis Dutil; Thomas Fevens; Geneviève Boucher; Sébastien Lemieux; Joseph Paul Cohen (CoRR, 2019)

Factorized embeddings learns rich and biologically meaningful embedding spaces using factorized tensor decomposition. - Assya Trofimov; Joseph Paul Cohen; Yoshua Bengio; Claude Perreault; Sébastien Lemieux (Bioinform., 2020)

CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation. - Tariq Daouda; Maude Dumont-Lagacé; Albert Feghaly; Yahya Benslimane; Rébecca Panes; Mathieu Courcelles; Mohamed Benhammadi; Lea Harrington; Pierre Thibault; François Major; Yoshua Bengio; Etienne Gagnon; et al. (PLoS Comput. Biol., 2021)