Modeling stochasticity and variability in gene regulatory networks. - David Murrugarra; Alan Veliz-Cuba; Boris Aguilar; Seda Arat; Reinhard C. Laubenbacher (EURASIP J. Bioinform. Syst. Biol., 2012)

A Systems Biology Approach to Microbiology and Cancer. - Seda Arat (2015)

Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. - Julia Chifman; Seda Arat; Zhiyong Deng; Erica Lemler; James C. Pino; Leonard A. Harris; Michael A. Kochen; Carlos F. Lopez; Steven A. Akman; Frank M. Torti; Suzy V. Torti; Reinhard C. Laubenbacher (PLoS Comput. Biol., 2017)

Meta-analysis of human gene expression in response to Mycobacterium tuberculosis infection reveals potential therapeutic targets. - Zhang Wang; Seda Arat; Michal Magid-Slav; James R. Brown (BMC Syst. Biol., 2018)

Annotation depth confounds direct comparison of gene expression across species. - Elias Oziolor; Seda Arat; Matthew Martin (BMC Bioinform., 2021)