A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. - Réka Albert; Bhaskar DasGupta; Riccardo Dondi; Sema Kachalo; Eduardo D. Sontag; Alexander Zelikovsky; Kelly Westbrooks (J. Comput. Biol., 2007)

NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks. - Sema Kachalo; Ranran Zhang; Eduardo D. Sontag; Réka Albert; Bhaskar DasGupta (Bioinform., 2008)

Mechanical forces mediate localized topological change in epithelia. - Yingzi Li; Hammad Naveed; Sema Kachalo; Lisa X. Xu; Jie Liang 002 (EMBC, 2011)

Dynamic mechanical finite element model of biological cells for studying cellular pattern formation. - Jieling Zhao; Hammad Naveed; Sema Kachalo; Youfang Cao; Wei Tian 003; Jie Liang 002 (EMBC, 2013)