DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues. - Pemra Ozbek; Seren Soner; Burak Erman; Turkan Haliloglu (Nucleic Acids Res., 2010)

Poster: co-allocation based scheduling for parallel systems. - Seren Soner; Can C. Özturan; Oguz Tosun (SC Companion, 2011)

Integer Programming Based Heterogeneous CPU-GPU Cluster Scheduler for SLURM Resource Manager. - Seren Soner; Can C. Özturan (HPCC-ICESS, 2012)

Integer programming based heterogeneous CPU-GPU cluster schedulers for SLURM resource manager. - Seren Soner; Can C. Özturan (J. Comput. Syst. Sci., 2015)

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics. - Seren Soner; Pemra Ozbek; José Ignacio Garzón; Nir Ben-Tal; Turkan Haliloglu (PLoS Comput. Biol., 2015)

Generating Multibillion Element Unstructured Meshes on Distributed Memory Parallel Machines. - Seren Soner; Can C. Özturan (Sci. Program., 2015)

A new auction-based scheduler for heterogeneous systems with moldable generic resources support. - Seren Soner; Can C. Özturan (Concurr. Comput. Pract. Exp., 2016)

Job scheduling for heterogeneous supercomputers (Heterojen süperbilgisayarlar için iş çizelgeleme) - Seren Soner (2016)