Fitting IVIM with Variable Projection and Simplicial Optimization. - Shreyas Fadnavis; Hamza Farooq; Maryam Afzali; Christophe Lenglet; Tryphon T. Georgiou; Hu Cheng; Sharlene D. Newman; Shahnawaz Ahmed; Rafael Neto Henriques; Eric Peterson; Serge Koudoro; Ariel Rokem; et al. (CoRR, 2019)

Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. - Alexandra Badea; Wenlin Wu; Jordan Shuff; Michele Wang; Robert J. Anderson; Yi Qi; G. Allan Johnson; Joan G. Wilson; Serge Koudoro; Eleftherios Garyfallidis; Carol A. Colton; David B. Dunson (Frontiers Neuroinformatics, 2019)

nipy/nibabel: 2.4.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nibabel: 2.4.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nibabel: 2.5.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nibabel: 2.5.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.2.3. - Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0-rc1. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0rc1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0rc2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2019)

nipy/nipype: 1.4.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; David Gage Ellis; Benjamin Yvernault; Carlo Hämäläinen; Michael Philipp Notter; Taylor Salo; et al. (Zenodo, 2019)

nipy/nibabel: 3.0.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nipype: 1.4.1. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.4.2. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nibabel: 3.0.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nibabel: 2.5.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; Demian Wassermann; et al. (Zenodo, 2020)

nipy/nibabel: 3.1.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; et al. (Zenodo, 2020)

nipy/nibabel: 3.1.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; Eric Larson; et al. (Zenodo, 2020)

nipy/nipype: 1.5.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nipype: 1.5.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nibabel: 3.2.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2020)

nipy/nibabel: 3.2.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2020)

ThetA - fast and robust clustering via a distance parameter. - Eleftherios Garyfallidis; Shreyas Fadnavis; Jong Sung Park; Bramsh Qamar Chandio; Javier Guaje; Serge Koudoro; Nasim Anousheh (CoRR, 2021)

FURY: advanced scientific visualization. - Eleftherios Garyfallidis; Serge Koudoro; Javier Guaje; Marc-Alexandre Côté; Soham Biswas; David Reagan; Nasim Anousheh; Filipi N. Silva; Geoffrey C. Fox; FURY Contributors (J. Open Source Softw., 2021)

FURY: advanced scientific visualisation. - Eleftherios Garyfallidis; Serge Koudoro; Javier Guaje; Marc-Alexandre Côté; Soham Biswas; David Reagan; Nasim Anousheh; Filipi N. Silva; Geoffrey C. Fox; FURY Contributors (Zenodo, 2021)

nipy/nipype: 1.7.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2021)

nipy/nipype: 1.7.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nibabel: 3.2.2. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nibabel: 4.0.0rc0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nibabel. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2022)

nipy/nipype: 1.8.3. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

brainlife.io: A decentralized and open source cloud platform to support neuroscience research. - Soichi Hayashi; Bradley Caron; Anibal Sólon Heinsfeld; Sophia Vinci-Booher; Brent C. McPherson; Daniel N. Bullock; Giulia Berto; J. Guiomar Niso; Sandra Hanekamp; Daniel Levitas; Lindsey Kitchell; Josiah Leong; et al. (CoRR, 2023)

nipy/nibabel: 5.0.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

nipy/nibabel: 5.0.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

nipy/nibabel: 5.1.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Yaroslav O. Halchenko; Michiel Cottaar; Eric Larson; Satrajit S. Ghosh; et al. (Zenodo, 2023)

nipy/nibabel: 5.2.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; et al. (Zenodo, 2023)

Introducing QuantConn: Overcoming Challenging Diffusion Acquisitions with Harmonization. - Nancy Newlin; Kurt Schilling; Serge Koudoro; Bramsh Qamar Chandio; Praitayini Kanakaraj; Daniel Moyer; Claire E. Kelly; Sila Genc; Joseph Yuan-Mou Yang; Ye Wu 001; Nagesh Adluru; Vishwesh Nath; et al. (CDMRI@MICCAI, 2024)

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI. - Nancy R. Newlin; Kurt Schilling; Serge Koudoro; Bramsh Qamar Chandio; Praitayini Kanakaraj; Daniel Moyer; Claire E. Kelly; Sila Genc; Jian Chen; Joseph Yuan-Mou Yang; Ye Wu; Yifei He; et al. (CoRR, 2024)

nipy/nibabel: 5.2.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; Satrajit S. Ghosh; et al. (Zenodo, 2024)

nipy/nibabel: 5.3.0. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Dimitri Papadopoulos Orfanos; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; et al. (Zenodo, 2024)

nipy/nibabel: 5.3.1. - Matthew Brett; Christopher J. Markiewicz; Michael Hanke; Marc-Alexandre Côté; Ben Cipollini; Dimitri Papadopoulos Orfanos; Paul McCarthy; Dorota Jarecka; Christopher P. Cheng; Eric Larson; Yaroslav O. Halchenko; Michiel Cottaar; et al. (Zenodo, 2024)