WinDat: An NMR Database Compilation Tool, User Interface, and Spectrum Libraries for Personal Computers. - Sergei V. Trepalin; Alexander V. Yarkov; Ludmila M. Dolmatova; Nikolai S. Zefirov; Simon A. E. Finch (J. Chem. Inf. Comput. Sci., 1995)

CheD: Chemical Database Compilation Tool, Internet Server, and Client for SQL Servers. - Sergei V. Trepalin; Alexander V. Yarkov (J. Chem. Inf. Comput. Sci., 2001)

SLIPPER-2001 - Software for Predicting Molecular Properties on the Basis of Physicochemical Descriptors and Structural Similarity. - Oleg A. Raevsky; Sergey V. Trepalin; Helen P. Trepalina; Vadim A. Gerasimenko; Olga E. Raevskaja (J. Chem. Inf. Comput. Sci., 2002)

New Diversity Calculations Algorithms Used for Compound Selection. - Sergei V. Trepalin; Vadim A. Gerasimenko; Andrey V. Kozyukov; Nikolay P. Savchuk; Andrey A. Ivaschenko (J. Chem. Inf. Comput. Sci., 2002)

Advanced Exact Structure Searching in Large Databases of Chemical Compounds. - Sergey V. Trepalin; Andrey V. Skorenko; Konstantin V. Balakin; Anatoly F. Nasonov; Stanley A. Lang; Andrey A. Ivashchenko; Nikolay P. Savchuk (J. Chem. Inf. Comput. Sci., 2003)

The centroidal algorithm in molecular similarity and diversity calculations on confidential datasets. - Sergey V. Trepalin; Nikolay Osadchiy (J. Comput. Aided Mol. Des., 2005)

Hierarchical Clustering of Large Databases and Classification of Antibiotics at High Noise Levels. - Sergei V. Trepalin; Alexander V. Yarkov (Algorithms, 2008)

Modular Chemical Descriptor Language (MCDL): Stereochemical modules. - Andrei A. Gakh; Michael N. Burnett; Sergei V. Trepalin; Alexander V. Yarkov (J. Cheminformatics, 2011)