Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA. - Surjit B. Dixit; Sergei Y. Ponomarev; David L. Beveridge (J. Chem. Inf. Model., 2006)

Importance of electrostatic polarizability in calculating cysteine acidity constants and copper(I) binding energy of Bacillus subtilis CopZ. - Timothy H. Click; Sergei Y. Ponomarev; George A. Kaminski (J. Comput. Chem., 2012)

Polarizable simulations with second order interaction model (POSSIM) force field: Developing parameters for protein side-chain analogues. - Xinbi Li; Sergei Y. Ponomarev; Qina Sa; Daniel L. Sigalovsky; George A. Kaminski (J. Comput. Chem., 2013)