Large-scale analysis of RNA-DNA interactions. - Aleksandra A. Galitsyna; Anastasia Zharikova; Maria Logacheva; Sergey V. Razin; Andrey Mironov; Alexey Gavrilov (BIBM, 2018)

Reconstruction of the chromatin 3D conformation from single cell Hi-C data. - Pavel I. Kos; Aleksandra A. Galitsyna; Sergey V. Ulianov; Mikhail S. Gelfand; Sergey V. Razin; Alexander V. Chertovich (BIBM, 2018)

The chromatin structure of Dictyostelium discoideum. - Olga Tsoy; Aleksandra A. Galitsyna; Ekaterina Khrameeva; Sergey V. Ulianov; Mikhail S. Gelfand; Sergey V. Razin (BIBM, 2018)

Nuclear lamina maintains global spatial organization of chromatin in Drosophila cultured cells. - Sergey V. Ulianov; Semen A. Doronin; Ekaterina E. Khrameeva; Pavel I. Kos; Sergey S. Starikov; Aleksandra A. Galitsyna; Artem Luzhin; Mikhail S. Gelfand; Alexander V. Chertovich; Sergey V. Razin; Yuri Y. Shevelyov (BIBM, 2018)

Single-cell Hi-C demonstrates that TADs are stable units of Drosophila genome folding that persist in individual cells. - Vlada S. Zakharova; Aleksandra A. Galitsyna; Kirill E. Polovnikov; Ekaterina E. Khrameeva; Mariya D. Logacheva; Elena A. Mikhaleva; Egor S. Vassetzky; Aleksey A. Gavrilov; Yuri Y. Shevelev; Sergey K. Nechaev; Sergey V. Ulianov; Sergey V. Razin (BIBM, 2018)

Benchmark of software tools for prokaryotic chromosomal interaction domain identification. - Mikhail D. Magnitov; Veronika S. Kuznetsova; Sergey V. Ulianov; Sergey V. Razin; Alexander V. Tyakht (Bioinform., 2020)

Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data. - Pavel I. Kos; Aleksandra A. Galitsyna; Sergey V. Ulianov; Mikhail S. Gelfand; Sergey V. Razin; Alexander V. Chertovich (PLoS Comput. Biol., 2021)

Pentad: a tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments. - Mikhail D. Magnitov; Azat K. Garaev; Alexander V. Tyakht; Sergey V. Ulianov; Sergey V. Razin (BMC Bioinform., 2022)

HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases. - Victoria A Kobets; Sergey V. Ulianov; Aleksandra A. Galitsyna; Semen A. Doronin; Elena A. Mikhaleva; Mikhail S. Gelfand; Yuri Y. Shevelyov; Sergey V. Razin; Ekaterina E. Khrameeva (Briefings Bioinform., 2023)