Cooltools: Enabling high-resolution Hi-C analysis in Python. - Nezar Abdennur; Sameer Abraham; Geoffrey Fudenberg; Ilya M. Flyamer; Aleksandra A. Galitsyna; Anton Goloborodko; Maxim Imakaev; Betul A. Oksuz; Sergey Venev; Yao Xiao (PLoS Comput. Biol., 2024)

Pairtools: From sequencing data to chromosome contacts. - Nezar Abdennur; Geoffrey Fudenberg; Ilya M. Flyamer; Aleksandra A. Galitsyna; Anton Goloborodko; Maxim Imakaev; Sergey Venev (PLoS Comput. Biol., 2024)

Bioframe: operations on genomic intervals in Pandas dataframes. - Nezar Abdennur; Geoffrey Fudenberg; Ilya M. Flyamer; Aleksandra A. Galitsyna; Anton Goloborodko; Maxim Imakaev; Sergey Venev (Bioinform., 2024)