Shortest paths ranking methodology to identify alterations in PPI networks of complex diseases. - Sérgio Nery Simões; David Correa Martins Jr.; Helena Paula Brentani; Ronaldo Fumio Hashimoto (BCB, 2012)

Network-Based Disease Gene Prioritization by Hitting Time Analysis. - Leandro de A. Lima; Sérgio Nery Simões; Ronaldo Fumio Hashimoto; David Correa Martins Jr.; Helena Paula Brentani; Guilherme Oliveira Mota (BIBE, 2014)

Multiview Clustering on PPI Network for Gene Selection and Enrichment from Microarray Data. - Tripti Swarnkar; Sérgio Nery Simões; David Correa Martins; Anji Anurak; Helena Paula Brentani; Ronaldo Fumio Hashimoto; Pabitra Mitra (BIBE, 2014)

Identifying dense subgraphs in protein-protein interaction network for gene selection from microarray data. - Tripti Swarnkar; Sérgio Nery Simões; Anji Anurak; Helena Paula Brentani; Jyotirmoy Chatterjee; Ronaldo Fumio Hashimoto; David Correa Martins; Pabitra Mitra (Netw. Model. Anal. Health Informatics Bioinform., 2015)

NERI: network-medicine based integrative approach for disease gene prioritization by relative importance. - Sérgio Nery Simões; David Correa Martins; Carlos A. de B. Pereira; Ronaldo Fumio Hashimoto; Helena Paula Brentani (BMC Bioinform., 2015)

Feature Selection for Identification of Risk Factors Associated with Infant Mortality. - André Louzada Colodette; Fabiano Novaes Barcellos Filho; Gustavo Carreiro Pinasco; Sheila Cristina de Souza Cruz; Sérgio Nery Simões (ICCABS, 2021)

Addressing Classification on Highly Imbalanced Clinical Datasets. - Alexandre Babilone Fonseca; David Correa Martins Jr.; Zofia Wicik; Marek Postula; Sérgio Nery Simões (ICCABS, 2021)

A Comparative Study of CNN for Prediction of Human Cancer Types Integrating Protein-Protein Interaction Networks and Omics Data. - Marilio Freire de Almeida; Sérgio Nery Simões; Karin Satie Komati (BSB, 2024)

AutoBioLearn: An Automated Data Science Framework for eXplainable Analyses (XAI) of Clinical Datasets. - Lucas P. B. Moreira; Maria L. G. Kuniyoshi; Zofia Wicik; David Correa Martins Jr.; Helena Paula Brentani; Sérgio Nery Simões (BSB, 2024)